MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-935

Family name MIR-935 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-935
Paralogues Bta-Mir-935-v1 
Orthologues Cja-Mir-935  Mmr-Mir-935  Pab-Mir-935 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037345.1: 61651413-61651472 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-935-v2)		 Mir-935-v1 NC_037345.1: 61651413-61651472 [+] UCSC Ensembl
Mir-935-v2 NC_037345.1: 61651413-61651472 [+] UCSC Ensembl
Variant

Bta-Mir-935-v2
Seed CAGUUAC
Precursor
(pre-Mir +30nt flank)		 
CUGCUCAAGGCCGGCGGGGGCGCGGGCGGCAGUGGCGGGAGCGGCCCCUCGGCCAUCCUCCGUCUGCCCAGUUACCGCUUCCGCUACCGCCGCCGCUCCCGCUCUAGCUCCCGCUCCAGC
Get precursor sequence
Structure
        10           20        30        40        50         
CUGCUCAAGGCCGGCGG---|  C    G    A             CCC  C   CAUCC 
                    GGG GCGG CGGC GUGGCGGGAGCGG   CU GGC     U
                    CCC CGCC GCCG CAUCGCCUUCGCC   GA CCG     C
CGACCUCGCCCUCGAUCUCG^  U    -    C             AUU  C   UCUGC 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-935-v2_5p*
mirBase accessionNone
Sequence 
0- AGUGGCGGGAGCGGCCCCUCGGC -23
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Mature sequence

Bta-Mir-935-v2_3p
mirBase accessionMIMAT0009385
Sequence 
37- CCAGUUACCGCUUCCGCUACCGC -60
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Proposed targets TargetScanVert: bta-miR-935
Variant

Bta-Mir-935-v1
Seed AGUUACC
Precursor
(pre-Mir +30nt flank)		 
CUGCUCAAGGCCGGCGGGGGCGCGGGCGGCAGUGGCGGGAGCGGCCCCUCGGCCAUCCUCCGUCUGCCCAGUUACCGCUUCCGCUACCGCCGCCGCUCCCGCUCUAGCUCCCGCUCCAGC
Get precursor sequence
Structure
        10           20        30        40        50         
CUGCUCAAGGCCGGCGG---|  C    G    A             CCC  C  CCAUCC 
                    GGG GCGG CGGC GUGGCGGGAGCGG   CU GG      U
                    CCC CGCC GCCG CAUCGCCUUCGCC   GA CC      C
CGACCUCGCCCUCGAUCUCG^  U    -    C             AUU  C  GUCUGC 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-935-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUGGCGGGAGCGGCCCCUCGG -22
Get sequence
Mature sequence

Bta-Mir-935-v1_3p
mirBase accessionMIMAT0009385
Sequence 
38- CAGUUACCGCUUCCGCUACCGC -60
Get sequence
Proposed targets TargetScanVert: bta-miR-935