| MirGeneDB ID | Cel-Mir-4813 |
|---|
| Family name |
MIR-4813 (all species) |
|---|
| Species |
Roundworm (Caenorhabditis elegans) |
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| MiRBase ID |
cel-mir-4813
|
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| Paralogues |
|
|---|
| Orthologues |
Cbr-Mir-4813
|
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| Node of Origin (locus) |
Caenorhabditis
|
|---|
| Node of Origin (family) |
Caenorhabditis
|
|---|
Genome context
(ce11) |
chrIII: 4571648-4571707 [+]
UCSC
Ensembl
|
|---|
| Seed |
GACUAUC |
|---|
Precursor
(pre-Mir +30nt flank) |
UGCCACAACUAUUCUAUUCUUUAUUUCACCAGACUAUCUAGGAAAUAUUGAACUAAUACAAAUUUUAGUUCAAUAUACCGGAUGGUCUGGUGAAAGCAACAUGCGUUGUAAGUUCUUUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGCCACAACUAUUCUAUUCUUUA--| A AA AAUAC
UUUCACCAGACUAUCU GG AUAUUGAACU A
AAAGUGGUCUGGUAGG CC UAUAACUUGA A
UUUUUCUUGAAUGUUGCGUACAACG^ - A- UUUUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Cel-Mir-4813_5p |
| mirBase accession | MIMAT0020000 |
|---|
| Sequence |
0- AGACUAUCUAGGAAAUAUUGAACU -24
Get sequence
|
|---|
| Co-mature sequence |
Cel-Mir-4813_3p |
| mirBase accession | MIMAT0020001 |
|---|
| Sequence |
38- UUCAAUAUACCGGAUGGUCUGG -60
Get sequence
|
|---|
