MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-54-P2

Family name MIR-54 (all species)
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-55
Paralogues Cel-Mir-54-P1  Cel-Mir-54-P3 
Orthologues Asu-Mir-54-o2  Cbr-Mir-54-P2 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Chromadorea
Genome context
(ce11)		 chrX: 13144842-13144902 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-54-P2)		 Mir-54-P3 chrX: 13144706-13144770 [-] UCSC Ensembl
Mir-54-P2 chrX: 13144842-13144902 [-] UCSC Ensembl
Mir-54-P1 chrX: 13145011-13145076 [-] UCSC Ensembl
Seed ACCCGUA
Precursor
(pre-Mir +30nt flank)		 
GCAUGUCUAGAUUUGGAACUUAAUGGGACUCGGCAGAAACCUAUCGGUUAUACUUUUUGGAUAUGCUAUACCCGUAUAAGUUUCUGCUGAGCCCCUUAUUCCUGUUUGGCGCUUCAAGCUA
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Structure
        10        20           30        40         50         
GCAUGUCUAGAUUUGGAACU---|  U   A            C   -   U    CUUUUU 
                       UAA GGG CUCGGCAGAAAC UAU CGG UAUA      G
                       AUU CCC GAGUCGUCUUUG AUA GCC AUAU      G
AUCGAACUUCGCGGUUUGUCCUU^  C   -            A   U   C    CGUAUA 
 .       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-54-P2_5p*
mirBase accessionMIMAT0020313
Sequence 
0- CGGCAGAAACCUAUCGGUUAUA -22
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Mature sequence

Cel-Mir-54-P2_3p
mirBase accessionMIMAT0000026
Sequence 
38- UACCCGUAUAAGUUUCUGCUGAG -61
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Proposed targets microrna.org: MIMAT0000026
TargetScanWorm: cel-miR-55