MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-138-P1

Family name MIR-138 (all species)
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-138a
Paralogues Cfa-Mir-138-P2 
Orthologues Aca-Mir-138-P1  Ami-Mir-138-P1  Bta-Mir-138-P1  Cja-Mir-138-P1  Cli-Mir-138-P1  Cmi-Mir-138-P1  Cpo-Mir-138-P1  Dno-Mir-138-P1  Dre-Mir-138-P1a  Eca-Mir-138-P1  Ete-Mir-138-P1  Gga-Mir-138-P1  Gja-Mir-138-P1  Gmo-Mir-138-P1a  Gmo-Mir-138-P1b  Hsa-Mir-138-P1  Laf-Mir-138-P1  Lch-Mir-138-P1  Loc-Mir-138-P1  Mal-Mir-138-P1a  Mal-Mir-138-P1b  Mdo-Mir-138-P1  Mml-Mir-138-P1  Mmr-Mir-138-P1  Mmu-Mir-138-P1  Mun-Mir-138-P1  Neu-Mir-138-P1  Oan-Mir-138-P1  Ocu-Mir-138-P1  Pab-Mir-138-P1  Pbv-Mir-138-P1  Pma-Mir-138-o1  Rno-Mir-138-P1  Sha-Mir-138-P1  Spt-Mir-138-P1  Sto-Mir-138-P1  Tgu-Mir-138-P1  Tni-Mir-138-P1a  Xla-Mir-138-P1c  Xla-Mir-138-P1d  Xtr-Mir-138-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr23: 2223137-2223197 [-] UCSC Ensembl
Seed GCUGGUG
Precursor
(pre-Mir +30nt flank)		 
CCGAGACCUCCAGGCAUGGUGUGGUGGGGCAGCUGGUGUUGUGAAUCAGGCCGUUGCCAAUCAGAGAACGGCUACUUCACAACACCAGGGUCACACCCCAUCACAGGCACCGGCUGCCGUC
Get precursor sequence
Structure
        10          20        30        40        50        60 
CCGAGACCUCCAGGCAU--|   U    G   AG             UCA     UUGCCAA 
                   GGUG GGUG GGC  CUGGUGUUGUGAA   GGCCG       \
                   CUAC CCAC CUG  GACCACAACACUU   UCGGC       U
CUGCCGUCGGCCACGGACA^   C    A   G-             CA-     AAGAGAC 
 .       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-138-P1_5p
mirBase accessionMIMAT0006654
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
Proposed targets TargetScanVert: cfa-miR-138a
miRDB: MIMAT0006654
Star sequence

Cfa-Mir-138-P1_3p*
mirBase accessionNone
Sequence 
40- GCUACUUCACAACACCAGGGU -61
Get sequence