| MirGeneDB ID | Lch-Mir-138-P1 |
|---|---|
| Family name | MIR-138 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-138-P2 |
| Orthologues | Aca-Mir-138-P1 Ami-Mir-138-P1 Bta-Mir-138-P1 Cfa-Mir-138-P1 Cja-Mir-138-P1 Cli-Mir-138-P1 Cmi-Mir-138-P1 Cpo-Mir-138-P1 Dno-Mir-138-P1 Dre-Mir-138-P1a Eca-Mir-138-P1 Ete-Mir-138-P1 Gga-Mir-138-P1 Gja-Mir-138-P1 Gmo-Mir-138-P1a Gmo-Mir-138-P1b Hsa-Mir-138-P1 Laf-Mir-138-P1 Loc-Mir-138-P1 Mal-Mir-138-P1a Mal-Mir-138-P1b Mdo-Mir-138-P1 Mml-Mir-138-P1 Mmr-Mir-138-P1 Mmu-Mir-138-P1 Mun-Mir-138-P1 Neu-Mir-138-P1 Oan-Mir-138-P1 Ocu-Mir-138-P1 Pab-Mir-138-P1 Pbv-Mir-138-P1 Pma-Mir-138-o1 Rno-Mir-138-P1 Sha-Mir-138-P1 Spt-Mir-138-P1 Sto-Mir-138-P1 Tgu-Mir-138-P1 Tni-Mir-138-P1a Xla-Mir-138-P1c Xla-Mir-138-P1d Xtr-Mir-138-P1 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127183.1: 243830-243890 [+] Ensembl |
| Seed | GCUGGUG |
| Precursor (pre-Mir +30nt flank) |
AAGUCAUGUCUGUCUAUGGUUUGGUGCAGCAGCUGGUGUUGUGAAUCAGGCCGCCACCAAUCACAGAACGGCUACUUCACAACACCAGGGUUGCACCUUGCUACUGUCAACUGGCAGCUCAGet precursor sequence |
| Structure | 10 20 30 40 50 60 AAGUCAUGUCUGUCUAU--| UU AG UCA CCACCAA GGU GGUGCAGC CUGGUGUUGUGAA GGCCG \ UCG CCACGUUG GACCACAACACUU UCGGC U ACUCGACGGUCAACUGUCA^ UU G- CA- AAGACAC . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-138-P1_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
| Star sequence | Lch-Mir-138-P1_3p* (predicted) |
| mirBase accession | None |
| Sequence |
40- GCUACUUCACAACACCAGGGU -61
Get sequence
|
