MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-208-P1

Family name MIR-208 (all species)
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-208b
Paralogues Cfa-Mir-208-P2 
Orthologues Bta-Mir-208-P1-v1  Cja-Mir-208-P1  Cpo-Mir-208-P1-v1  Dno-Mir-208-P1-v1  Dre-Mir-208-P1  Ebu-Mir-208-o1  Eca-Mir-208-P1-v1  Ete-Mir-208-P1a  Ete-Mir-208-P1b  Gmo-Mir-208-P1  Hsa-Mir-208-P1-v1  Laf-Mir-208-P1  Lch-Mir-208-P1  Loc-Mir-208-P1c  Loc-Mir-208-P1d  Loc-Mir-208-P1e  Mal-Mir-208-P1  Mdo-Mir-208-P1  Mml-Mir-208-P1-v1  Mmr-Mir-208-P1-v1  Mmu-Mir-208-P1-v1  Mun-Mir-208-P1  Neu-Mir-208-P1  Ocu-Mir-208-P1-v1  Pab-Mir-208-P1  Rno-Mir-208-P1-v1  Sha-Mir-208-P1  Sto-Mir-208-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr8: 3665170-3665226 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-208-P1-v1)		 Mir-208-P2 chr8: 3636925-3636981 [-] UCSC Ensembl
Mir-208-P1-v1 chr8: 3665170-3665226 [-] UCSC Ensembl
Mir-208-P1-v2 chr8: 3665170-3665226 [-] UCSC Ensembl
Variant

Cfa-Mir-208-P1-v1
Seed UAAGACG
Precursor
(pre-Mir +30nt flank)		 
CCAGGGCCCCAGCUCCUUCUCCUCUCAGGGAAGCUUUUUGCUCGCGUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGUAGAGUGCUCCCACCAGGGGCAG
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Structure
        10          20        30        40        50        
CCAGGGCCCCAGCUCCU--|  C        G          C   CG      UUCUC 
                   UCU CUCUCAGG AAGCUUUUUG UCG  UUAUGU     \
                   AGA GGGAGUCU UUUGGAAAAC AGC  AAUAUA     A
GACGGGGACCACCCUCGUG^  U        G          A   AG      AGCCU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-208-P1-v1_5p*
mirBase accessionNone
Sequence 
0- AAGCUUUUUGCUCGCGUUAUGU -22
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Mature sequence

Cfa-Mir-208-P1-v1_3p
mirBase accessionMIMAT0009869
Sequence 
35- AUAAGACGAACAAAAGGUUUGU -57
Get sequence
Proposed targets TargetScanVert: cfa-miR-208b
miRDB: MIMAT0009869
Variant

Cfa-Mir-208-P1-v2
Seed AUAAGAC
Precursor
(pre-Mir +30nt flank)		 
CCAGGGCCCCAGCUCCUUCUCCUCUCAGGGAAGCUUUUUGCUCGCGUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGUAGAGUGCUCCCACCAGGGGCAG
Get precursor sequence
Structure
        10          20        30        40        50        
CCAGGGCCCCAGCUCCU--|  C        G          C   CG       UCUC 
                   UCU CUCUCAGG AAGCUUUUUG UCG  UUAUGUU    \
                   AGA GGGAGUCU UUUGGAAAAC AGC  AAUAUAA    A
GACGGGGACCACCCUCGUG^  U        G          A   AG       GCCU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-208-P1-v2_5p*
mirBase accessionNone
Sequence 
0- AAGCUUUUUGCUCGCGUUAUGUU -23
Get sequence
Mature sequence

Cfa-Mir-208-P1-v2_3p
mirBase accessionMIMAT0009869
Sequence 
34- UAUAAGACGAACAAAAGGUUUGU -57
Get sequence
Proposed targets TargetScanVert: cfa-miR-208b
miRDB: MIMAT0009869