MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-339

Family name MIR-339 (all species)
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-339-1
Paralogues
Orthologues Bta-Mir-339  Cja-Mir-339  Cpo-Mir-339  Dno-Mir-339  Eca-Mir-339  Ete-Mir-339  Hsa-Mir-339  Laf-Mir-339  Mml-Mir-339  Mmr-Mir-339  Mmu-Mir-339  Ocu-Mir-339  Pab-Mir-339  Rno-Mir-339 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chr6: 15853520-15853577 [+] UCSC Ensembl
Seed CCCUGUC
Precursor
(pre-Mir +30nt flank)		 
CGGCCACAACAGCAGCUCUGGCAGCCGCCCUCCCUGUCCUCCAGGAGCUCACUUAUAUCUGGCCGUGAGCUCCUCGAGGCCAGAGCCCGCGUCUGCCUCCACUCAGCACCAAUCCAAG
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Structure
        10          20        30        40        50        
CGGCCACAACAGCAGCUCU--|    C   CCUCC   U    C          UUAUA 
                     GGCAG CGC     CUG CCUC AGGAGCUCAC     U
                     CCGUC GCG     GAC GGAG UCCUCGAGUG     C
GAACCUAACCACGACUCACCU^    U   CCCGA   C    C          CCGGU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-339_5p
mirBase accessionMIMAT0011134
Sequence 
0- UCCCUGUCCUCCAGGAGCUCACU -23
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Proposed targets TargetScanVert: cfa-miR-339
miRDB: MIMAT0011134
Star sequence

Cfa-Mir-339_3p*
mirBase accessionNone
Sequence 
35- UGAGCUCCUCGAGGCCAGAGCCC -58
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