Mir-876-v2

MirGeneDB ID

Cfa-Mir-876

Family name

MIR-876 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-876

Paralogues

Cfa-Mir-876-v1

Orthologues

Ete-Mir-876 Mmr-Mir-876

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(canFam3_add)

chr11: 46819472-46819534 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-876-v2)

Mir-876-v2 chr11: 46819472-46819534 [-] UCSC Ensembl
Mir-876-v1 chr11: 46819474-46819532 [-] UCSC Ensembl
Mir-873-v1 chr11: 46838187-46838245 [-] UCSC Ensembl
Mir-873-v2 chr11: 46838188-46838244 [-] UCSC Ensembl

Variant

Cfa-Mir-876-v2

Seed

GGAUUUC

Precursor
(pre-Mir +30nt flank)

ACCAAGCUUUACCCAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAUCU

Get precursor sequence

Structure

        10          20        30        40        50        60 
ACCAAGCUUUACCCAAA--|       UG         U               UAUCUAAG 
                   CUGUGAAG  CUGUGGAUU CUUUGUGAAUCACCA        \
                   GACACUUC  GAUACUUAA GAAACAUUUGGUGGU        C
UCUAGUUGACGUCUUCGUG^       GU         U               GGUGUAAU 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-876-v2_5p

mirBase accession

MIMAT0009932

Sequence

0- UGGAUUUCUUUGUGAAUCACCA -22

Get sequence

Proposed targets

TargetScanVert: cfa-miR-876
miRDB: MIMAT0009932

Star sequence

Cfa-Mir-876-v2_3p*

mirBase accession

None

Sequence

41- GUGGUUUACAAAGUAAUUCAUA -63

Get sequence

Variant

Cfa-Mir-876-v1

Seed

GGUGGUU

Precursor
(pre-Mir +30nt flank)

CAAGCUUUACCCAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAU

Get precursor sequence

Structure

        10          20        30        40        50         
CAAGCUUUACCCAAACU--|     UG         U                AUCUAAG 
                   GUGAAG  CUGUGGAUU CUUUGUGAAUCACCAU       \
                   CACUUC  GAUACUUAA GAAACAUUUGGUGGUG       C
UAGUUGACGUCUUCGUGGA^     GU         U                GUGUAAU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-876-v1_5p*

mirBase accession

MIMAT0009932

Sequence

0- GAUUUCUUUGUGAAUCACCAUA -22

Get sequence

Proposed targets

TargetScanVert: cfa-miR-876
miRDB: MIMAT0009932

Mature sequence

Cfa-Mir-876-v1_3p

mirBase accession

None

Sequence

37- UGGUGGUUUACAAAGUAAUUCA -59

Get sequence