MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4034

Family name MIR-4034 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4034
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 14: 3281763-3281819 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4034)		 Mir-3598 14: 3281620-3281678 [-] UCSC Ensembl
Mir-4034 14: 3281763-3281819 [-] UCSC Ensembl
Seed CACAGUG
Precursor
(pre-Mir +30nt flank)		 
GUUUCCCAAGUUAACGCGCGAACGACCCCGGCACAGUGCUCUAGGAAAGUAAAGCUCACUUCGUACUUUUCUCUGGCACUGCGAGCAUGGUUGCCUCGCCCUUCUCGCCGCCUGUAA
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Structure
        10         20         30          40        50       
GUUUCCCAAGUUAACGC-    A-     CCG  A--|      CU         AAGCU 
                  GCGA  CGACC   GC   CAGUGCU  AGGAAAGUA     C
                  CGCU  GUUGG   CG   GUCACGG  UCUUUUCAU     A
AAUGUCCGCCGCUCUUCC    CC     UA-  AGC^      UC         GCUUC 
     110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4034_5p
mirBase accessionMIMAT0016557
Sequence 
0- GCACAGUGCUCUAGGAAAGUA -21
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Star sequence

Cin-Mir-4034_3p*
mirBase accessionMIMAT0016558
Sequence 
35- CUUUUCUCUGGCACUGCGAGCA -57
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