MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4048

Family name MIR-4048 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4048
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 13: 1257512-1257570 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4048)		 Mir-4063 13: 1256492-1256550 [-] UCSC Ensembl
Mir-4048 13: 1257512-1257570 [-] UCSC Ensembl
Seed CACCUUG
Precursor
(pre-Mir +30nt flank)		 
AAAUCAUGUCAGAAAAUACAGGUUGCCUUCGCACCUUGGUCACCAUUAUUUGCUCCUUUUAUAUUGAGCAGUACUGGAGACAGGUGGAAUGGCAGCACUGAUAUAUCAUUGUGACAUCA
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Structure
        10         20          30        40        50        60
AAAUCAUGUCAGAAAAUA-   -      -|  G     UG   A   U    U    CUUU 
                   CAG GUUGCC UUC CACCU  GUC CCA UAUU GCUC    U
                   GUC CGACGG AAG GUGGA  CAG GGU AUGA CGAG    A
ACUACAGUGUUACUAUAUA   A      U^  -     --   A   C    -    UUAU 
       110       100        90           80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4048_5p
mirBase accessionMIMAT0016585
Sequence 
0- GCACCUUGGUCACCAUUAUUUGCUC -25
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Star sequence

Cin-Mir-4048_3p*
mirBase accessionMIMAT0016586
Sequence 
37- GCAGUACUGGAGACAGGUGGAA -59
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