MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4060

Family name MIR-4060 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4060
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 HT000174.1: 91188-91245 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4060)		 Mir-4078 HT000174.1: 91084-91136 [+] UCSC Ensembl
Mir-4060 HT000174.1: 91188-91245 [+] UCSC Ensembl
Seed UUUCACU
Precursor
(pre-Mir +30nt flank)		 
UGUGGUUCAUAUUUUAUUCGUUGCGCUGCGAUUUCACUCUUUCAACUGUUGGUCGAAAUAUAUCCAGCCGUUGUUGCAGUGAAGUGAUCAGCGUAAUGCGCUACGUCAUCAAAACUGC
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Structure
        10          20        30         40        50        
UGUGGUUCAUAUUUUAUU--          CG-|       CUUU    U     UCGAA 
                    CGUUGCGCUG   AUUUCACU    CAAC GUUGG     \
                    GUAAUGCGAC   UGAAGUGA    GUUG CGACC     A
CGUCAAAACUACUGCAUCGC          UAG^       CGUU    C     UAUAU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4060_5p
mirBase accessionMIMAT0016608
Sequence 
0- AUUUCACUCUUUCAACUGUUGG -22
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Co-mature sequence

Cin-Mir-4060_3p
mirBase accessionMIMAT0016609
Sequence 
35- AGCCGUUGUUGCAGUGAAGUGAU -58
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