MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4079

Family name MIR-4079 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4079
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 7: 634173-634224 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4079)		 Mir-4055 7: 633871-633928 [-] UCSC Ensembl
Mir-4079 7: 634173-634224 [-] UCSC Ensembl
Seed GCUUCAU
Precursor
(pre-Mir +30nt flank)		 
CUGAGUUGACUGCUAUAAGCCACUAUAGACUGCUUCAUCUACUAGGUUAGCUGGAACAGCUAGCUCUAGCUGAUGUAGCAAACUAAAGGGGUCCGGGUCGUCUAUGCGUUUC
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Structure
        10          20        30        40         50     
CUGAGUUGACUGCUAUAA--   A  A   AC    U    UA    -|      GG 
                    GCC CU UAG  UGCU CAUC  CUAG GUUAGCU  \
                    UGG GA AUC  ACGA GUAG  GAUC CGAUCGA  A
CUUUGCGUAUCUGCUGGGCC   G  A   AA    U    UC    U^      CA 
110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4079_5p
mirBase accessionMIMAT0016647
Sequence 
0- UGCUUCAUCUACUAGGUUAGCU -22
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Star sequence

Cin-Mir-4079_3p*
mirBase accessionMIMAT0016648
Sequence 
29- CUAGCUCUAGCUGAUGUAGCAAA -52
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