MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-92-o73

Family name MIR-92 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-92d
Paralogues Cin-Mir-92-o69  Cin-Mir-92-o70  Cin-Mir-92-o71  Cin-Mir-92-o72  Cin-Mir-92-o74  Cin-Mir-92-o75  Cin-Mir-92-o76  Cin-Mir-92-o77  Cin-Mir-92-o78 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) C. intestinalis
Node of Origin (family) Bilateria
Genome context
(ci3)		 3: 884985-885041 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o73)		 Mir-92-o72 3: 884650-884701 [+] UCSC Ensembl
Mir-92-o73 3: 884985-885041 [+] UCSC Ensembl
Mir-92-o74 3: 885439-885494 [+] UCSC Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
AACCCAACCUCAUCUGUGGUGCCUUCGAUAGGUCGUGUUUGGUGUAUCAUACUUAAGCAAACACAGUAUUGCACCUGUCCCGGCCGAUCGCGGUUACUUUUGUCACAAAUUGGUAAA
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Structure
        10          20        30        40        50         
AACCCAACCUCAUCUGU--|   C  U    A     UGUUU      UC     UAAGC 
                   GGUG CU CGAU GGUCG     GGUGUA  AUACU     \
                   UCAU GG GCUA CCGGC     CCACGU  UAUGA     A
AAAUGGUUAAACACUGUUU^   U  C    G     CCUGU      --     CACAA 
     110       100        90        80        70          60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-92-o73_5p*
mirBase accessionMIMAT0016423
Sequence 
0- GGUCGUGUUUGGUGUAUCAUACU -23
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Mature sequence

Cin-Mir-92-o73_3p
mirBase accessionMIMAT0016424
Sequence 
36- UAUUGCACCUGUCCCGGCCGA -57
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