MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-1180

Family name MIR-1180 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Eca-Mir-1180  Hsa-Mir-1180  Mml-Mir-1180  Mmr-Mir-1180  Pab-Mir-1180 
Node of Origin (locus) Boreoeutheria
Node of Origin (family) Boreoeutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021919.1: 79252712-79252767 [-] UCSC Ensembl
Seed UUCCGGC
Precursor
(pre-Mir +30nt flank)		 
AGUCCCGGCGGGGCUAAGCCCGCGGCUGCCGGACCCACCCGGCCGGGAAUAGUGCUCCUGGUUGUUUCCGGCUCGUGUGGGUGUGUUGGCGGCGGGGCCUGACACCCCCGGCCUCU
Get precursor sequence
Structure
        10          20        30        40         50       
AGUCCCGGCGGGGCUAAG--     G   GC  G      C  -|         GUGCU 
                    CCCGC GCU  CG ACCCAC CG GCCGGGAAUA     \
                    GGGCG CGG  GU UGGGUG GC CGGCCUUUGU     C
UCUCCGGCCCCCACAGUCCG     G   UU  G      U  U^         UGGUC 
    110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Cja-Mir-1180_5p*
mirBase accessionNone
Sequence 
0- GGACCCACCCGGCCGGGAAUA -21
Get sequence
Mature sequence

Cja-Mir-1180_3p
mirBase accessionNone
Sequence 
34- UUUCCGGCUCGUGUGGGUGUGU -56
Get sequence