MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-188-P2

Family name MIR-188 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-188-P1  Cja-Mir-188-P3 
Orthologues Bta-Mir-188-P2  Cfa-Mir-188-P2  Cpo-Mir-188-P2  Dno-Mir-188-P2  Eca-Mir-188-P2  Hsa-Mir-188-P2  Laf-Mir-188-P2  Mml-Mir-188-P2  Mmr-Mir-188-P2  Mmu-Mir-188-P2  Ocu-Mir-188-P2  Pab-Mir-188-P2  Rno-Mir-188-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 48745060-48745119 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P2)		 Mir-188-P1 CM021937.1: 48744712-48744770 [+] UCSC Ensembl
Mir-188-P2 CM021937.1: 48745060-48745119 [+] UCSC Ensembl
Mir-362-P3a-v1 CM021937.1: 48749996-48750057 [+] UCSC Ensembl
Mir-362-P3a-v2 CM021937.1: 48749996-48750057 [+] UCSC Ensembl
Mir-362-P4 CM021937.1: 48750538-48750596 [+] UCSC Ensembl
Mir-362-P5 CM021937.1: 48751289-48751347 [+] UCSC Ensembl
Mir-188-P3 CM021937.1: 48754892-48754950 [+] UCSC Ensembl
Seed AUCCCUU
Precursor
(pre-Mir +30nt flank)		 
AGAGUGAGCCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCUUCAGCUUUCCUUGCUCUC
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Structure
        10          20         30        40        50         
AGAGUGAGCCCUUCCCU--    -| UC   CA  UC         GU      UGAGCUU 
                   GCUC CC  UCU  CA  CCUUGCAUG  GGAGGG       U
                   CGAG GG  AGG  GU  GGGACGUAC  CCUCCC       C
CUCUCGUUCCUUUCGACUU    U^ U-   AC  UU         AC      CAAAAGU 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
To
Mature sequence

Cja-Mir-188-P2_5p
mirBase accessionNone
Sequence 
0- CAUCCCUUGCAUGGUGGAGGGU -22
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Star sequence

Cja-Mir-188-P2_3p* (predicted)
mirBase accessionNone
Sequence 
38- CCUCCCACAUGCAGGGUUUGCA -60
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