MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-506-P5d1

Family name MIR-506 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-506-P1a  Cja-Mir-506-P1b  Cja-Mir-506-P1c  Cja-Mir-506-P1d  Cja-Mir-506-P1e  Cja-Mir-506-P2a  Cja-Mir-506-P3  Cja-Mir-506-P4  Cja-Mir-506-P5d2  Cja-Mir-506-P6a  Cja-Mir-506-P6b  Cja-Mir-506-P6c  Cja-Mir-506-P6d  Cja-Mir-506-P6e  Cja-Mir-506-P6o1  Cja-Mir-506-P6o2  Cja-Mir-506-P6o3  Cja-Mir-506-P6o4 
Orthologues Bta-Mir-506-P5  Cpo-Mir-506-P5  Ete-Mir-506-P5d  Laf-Mir-506  Mmr-Mir-506-P5  Ocu-Mir-506-P5  Rno-Mir-506-P5 
Node of Origin (locus) C. jacchus
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 139086335-139086391 [-] UCSC Ensembl
Seed UCUCAAG
Precursor
(pre-Mir +30nt flank)		 
CCACAUUCAGCCAUUCAGCGUGCAGUGCCUUUCUCAAGAAGGUGGCAUUCAUGUGAACUAAAAUAUGAUGUCACUUUUUUGAGAAGAGUAAUGUACAGCAUGUACUGCGCACGUGGU
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Structure
        10          20        30        40        50        
CCACAUUCAGCCAUUCA-  -|    G   C                   U    UGAA 
                  GC GUGCA UGC UUUCUCAAGAAGGUGGCAU CAUG    C
                  CG CAUGU AUG GAAGAGUUUUUUCACUGUA GUAU    U
UGGUGCACGCGUCAUGUA  A^    A   A                   -    AAAA 
     110       100        90        80        70         60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Cja-Mir-506-P5d1_5p (predicted)
mirBase accessionNone
Sequence 
0- UUCUCAAGAAGGUGGCAUUCAUG -23
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Star sequence

Cja-Mir-506-P5d1_3p* (predicted)
mirBase accessionNone
Sequence 
35- UGAUGUCACUUUUUUGAGAAGA -57
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