Mir-506-P5

MirGeneDB ID

Ocu-Mir-506-P5

Family name

MIR-506 (all species)

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-513

Paralogues

Ocu-Mir-506-P1f Ocu-Mir-506-P1g Ocu-Mir-506-P1h Ocu-Mir-506-P2a Ocu-Mir-506-P3 Ocu-Mir-506-P4

Orthologues

Bta-Mir-506-P5 Cja-Mir-506-P5d1 Cja-Mir-506-P5d2 Cpo-Mir-506-P5 Ete-Mir-506-P5d Ete-Mir-506-P5e Hsa-Mir-506-P5a1 Hsa-Mir-506-P5a2 Hsa-Mir-506-P5b Hsa-Mir-506-P5c Laf-Mir-506 Mml-Mir-506-P5o1 Mml-Mir-506-P5o2 Mml-Mir-506-P5o3 Mml-Mir-506-P5o4a Mml-Mir-506-P5o4b Mmr-Mir-506-P5 Pab-Mir-506-P5o5 Pab-Mir-506-P5o6 Pab-Mir-506-P5o7 Pab-Mir-506-P5o8 Rno-Mir-506-P5

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(oryCun2_add)

chrUn0002: 10678464-10678522 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P5)

Mir-506-P5 chrUn0002: 10678464-10678522 [-] UCSC Ensembl
Mir-506-P1h chrUn0002: 10687771-10687828 [-] UCSC Ensembl
Mir-506-P4 chrUn0002: 10694554-10694611 [-] UCSC Ensembl
Mir-506-P3 chrUn0002: 10705716-10705773 [-] UCSC Ensembl
Mir-506-P2a chrUn0002: 10707176-10707233 [-] UCSC Ensembl
Mir-506-P1g chrUn0002: 10711587-10711644 [-] UCSC Ensembl
Mir-506-P1f chrUn0002: 10723771-10723827 [-] UCSC Ensembl

Seed

UCACAAG

Precursor
(pre-Mir +30nt flank)

CCACAUUCAGCUAUUCAGUGUGCAGUGCCUUUCACAAGAAGGUGUCAUUCAUGUGAACCAAAAAUAUGAAUGAUGCCUUUUUGAGAAAAGUAAUGUACAUCAUGAAAUGCAUAUGUGGC

Get precursor sequence

Structure

        10          20        30        40        50         
CCACAUUCAGCUAUUCA--|      G   C    A                   UGAAC 
                   GUGUGCA UGC UUUC CAAGAAGGUGUCAUUCAUG     \
                   UACAUGU AUG AAAG GUUUUUCCGUAGUAAGUAU     C
CGGUGUAUACGUAAAGUAC^      A   A    A                   AAAAA 
       110       100        90        80        70        60