Mir-506-P5b

MirGeneDB ID

Hsa-Mir-506-P5b

Family name

MIR-506 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-513b

Paralogues

Hsa-Mir-506-P1a1 Hsa-Mir-506-P1a2 Hsa-Mir-506-P1a3 Hsa-Mir-506-P1b Hsa-Mir-506-P1c1 Hsa-Mir-506-P1c2 Hsa-Mir-506-P1c3 Hsa-Mir-506-P1d Hsa-Mir-506-P1e Hsa-Mir-506-P2b Hsa-Mir-506-P3 Hsa-Mir-506-P4 Hsa-Mir-506-P5a1 Hsa-Mir-506-P5a2 Hsa-Mir-506-P5c Hsa-Mir-506-P6a Hsa-Mir-506-P6b Hsa-Mir-506-P6c Hsa-Mir-506-P6d Hsa-Mir-506-P6e

Orthologues

Bta-Mir-506-P5 Cpo-Mir-506-P5 Laf-Mir-506 Mmr-Mir-506-P5 Ocu-Mir-506-P5 Rno-Mir-506-P5

Node of Origin (locus)

H. sapiens

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 147199057-147199114 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P5b)

Mir-506-P5c chrX: 147189717-147189774 [-] UCSC Ensembl
Mir-506-P5b chrX: 147199057-147199114 [-] UCSC Ensembl
Mir-506-P5a2 chrX: 147213498-147213555 [-] UCSC Ensembl
Mir-506-P5a1 chrX: 147225860-147225917 [-] UCSC Ensembl
Mir-506-P4 chrX: 147230753-147230809 [-] UCSC Ensembl
Mir-506-P2b chrX: 147231002-147231059 [-] UCSC Ensembl
Mir-506-P3 chrX: 147236945-147237002 [-] UCSC Ensembl

Seed

UCACAAG

Precursor
(pre-Mir +30nt flank)

CCACAUUCAGCCAUUCAGUGUACAGUGCCUUUCACAAGGAGGUGUCAUUUAUGUGAACUAAAAUAUAAAUGUCACCUUUUUGAGAGGAGUAAUGUACAGCAUGCACUGCAUAUGUGGU

Get precursor sequence

Structure

        10          20        30        40        50        
CCACAUUCAGCCAUUCAG--|     G   CU   A          U       GUGAA 
                    UGUACA UGC  UUC CAAGGAGGUG CAUUUAU     C
                    ACAUGU AUG  GAG GUUUUUCCAC GUAAAUA     U
UGGUGUAUACGUCACGUACG^     A   AG   A          U       UAAAA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-506-P5b_5p

mirBase accession

MIMAT0005788

Sequence

0- UUCACAAGGAGGUGUCAUUUAU -22

Get sequence

Proposed targets

microrna.org: MIMAT0005788
TargetScanVert: hsa-miR-513b-5p
miRDB: MIMAT0005788

Star sequence

Hsa-Mir-506-P5b_3p*

mirBase accession

MIMAT0026749

Sequence

35- UAAAUGUCACCUUUUUGAGAGGA -58

Get sequence

Proposed targets

TargetScanVert: hsa-miR-513b-3p
miRDB: MIMAT0026749