MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-580

Family name MIR-580 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-580  Mml-Mir-580  Pab-Mir-580 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021916.1: 166252749-166252807 [+] UCSC Ensembl
Seed UUGAGUC
Precursor
(pre-Mir +30nt flank)		 
UUAAGUUAGAUAAAAUUUCUGAUAGGUACCUAAUGAUCAUAGACUCAGAUAUUUAAGUUAACAGUAUUUGAGUCUGAUGAAUCAUUAGGUUCCAAUCAUAAAUUUUUCAUUUGGUUUCA
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Structure
        10          20        30          40        50        
UUAAGUUAGAUAAAAUUUC--    A  U         -   -|           UUUAAG 
                     UGAU GG ACCUAAUGA UCA UAGACUCAGAUA      \
                     ACUA CC UGGAUUACU AGU GUCUGAGUUUAU      U
ACUUUGGUUUACUUUUUAAAU    A  U         A   A^           GACAAU 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
- +
To
Star sequence

Cja-Mir-580_5p* (predicted)
mirBase accessionNone
Sequence 
0- UAAUGAUCAUAGACUCAGAUA -21
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Mature sequence

Cja-Mir-580_3p (predicted)
mirBase accessionNone
Sequence 
36- UUUGAGUCUGAUGAAUCAUUAGG -59
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