MirGeneDB 3.0
MirGeneDB ID

Cmi-Novel-9

Family name CMI-NOVEL-9 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. milii
Node of Origin (family) C. milii
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636030.1: 458684-458743 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Novel-9)		 Novel-9 KI636030.1: 458684-458743 [-] UCSC Ensembl
Mir-8-P3a KI636030.1: 458844-458902 [-] UCSC Ensembl
Mir-8-P2a KI636030.1: 464118-464178 [-] UCSC Ensembl
Mir-8-P1a KI636030.1: 466250-466309 [-] UCSC Ensembl
Seed AUUCAAG
Precursor
(pre-Mir +30nt flank)		 
UGUAGGUGAGGCCACUCAGGGGUUGAGCUGUGGGCUGUGCGCUGCUGUUUGGGUGUGUUACUGAAGUCCAUUCAAGUGCAUCGGUUCAAAGUACAACUUUAAUACGUCUGGCCUGUUAAU
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Structure
        10          20        30         40        50          
UGUAGGUGAGGCCACUCA--       A   G       -|     GC  UU    UGUGUU 
                    GGGGUUG GCU UGGGCUG UGCGCU  UG  UGGG      \
                    UUUCAAC UGA ACUUGGC ACGUGA  AC  ACCU      A
UAAUUGUCCGGUCUGCAUAA       A   A       U^     --  UU    GAAGUC 
.       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Novel-9_5p*
mirBase accessionNone
Sequence 
0- UGGGCUGUGCGCUGCUGUUUGGG -23
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Mature sequence

Cmi-Novel-9_3p
mirBase accessionNone
Sequence 
38- CAUUCAAGUGCAUCGGUUCAAA -60
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