MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-142-P4

Family name MIR-142 (all species)
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-142-2
Paralogues Cpi-Mir-142-P2-v1 
Orthologues Aca-Mir-142-P4-v1  Ami-Mir-142-P4-v1  Dre-Mir-142-P4-v1  Gja-Mir-142-P4-v1  Gmo-Mir-142-P4-v1  Lch-Mir-142-P4  Mal-Mir-142-P4-v1  Mun-Mir-142-P4  Pbv-Mir-142-P4-v1  Tni-Mir-142-P4-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH585047: 322623-322682 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P4-v1)		 Mir-142-P4-v4 JH585047: 322621-322684 [-] UCSC Ensembl
Mir-142-P4-v1 JH585047: 322623-322682 [-] UCSC Ensembl
Mir-142-P4-v2 JH585047: 322623-322682 [-] UCSC Ensembl
Mir-142-P4-v3 JH585047: 322623-322682 [-] UCSC Ensembl
Variant

Cpi-Mir-142-P4-v1
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
ACUGGCACCGAUACGGACAGUGCACUCCUCCAUAAAGUAGAAAGCACUACUAAACCGCCGCGUCCCGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGGACGAGAGA
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Structure
        10          20        30        40        50         
ACUGGCACCGAUACGGA--|         C            A         UAAACCGC 
                   CAGUGCACUC UCCAUAAAGUAG AAGCACUAC        C
                   GUCAUGUGAG AGGUAUUUCAUC UUUGUGAUG        G
AGAGAGCAGGGCAACGAGU^         U            C         UGCCCUGC 
.       110       100        90        80        70        60
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Te Te Te To
Mature sequence

Cpi-Mir-142-P4-v1_5p
mirBase accessionMIMAT0037766
Sequence 
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Cpi-Mir-142-P4-v1_3p*
mirBase accessionMIMAT0037767
Sequence 
38- GUAGUGUUUCCUACUUUAUGGA -60
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Variant

Cpi-Mir-142-P4-v2
Seed UAGUGUU
Precursor
(pre-Mir +30nt flank)		 
ACUGGCACCGAUACGGACAGUGCACUCCUCCAUAAAGUAGAAAGCACUACUAAACCGCCGCGUCCCGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGGACGAGAGA
Get precursor sequence
Structure
        10          20        30        40        50         
ACUGGCACCGAUACGGA--|         C            A         UAAACCGC 
                   CAGUGCACUC UCCAUAAAGUAG AAGCACUAC        C
                   GUCAUGUGAG AGGUAUUUCAUC UUUGUGAUG        G
AGAGAGCAGGGCAACGAGU^         U            C         UGCCCUGC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archive.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Te Te Te To
Star sequence

Cpi-Mir-142-P4-v2_5p*
mirBase accessionMIMAT0037766
Sequence 
0- CAUAAAGUAGAAAGCACUACUA -22
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Mature sequence

Cpi-Mir-142-P4-v2_3p
mirBase accessionMIMAT0037767
Sequence 
38- GUAGUGUUUCCUACUUUAUGGA -60
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Variant

Cpi-Mir-142-P4-v3
Seed GUAGUGU
Precursor
(pre-Mir +30nt flank)		 
ACUGGCACCGAUACGGACAGUGCACUCCUCCAUAAAGUAGAAAGCACUACUAAACCGCCGCGUCCCGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGGACGAGAGA
Get precursor sequence
Structure
        10          20        30        40        50         
ACUGGCACCGAUACGGA--|         C            A         UAAACCGC 
                   CAGUGCACUC UCCAUAAAGUAG AAGCACUAC        C
                   GUCAUGUGAG AGGUAUUUCAUC UUUGUGAUG        G
AGAGAGCAGGGCAACGAGU^         U            C         UGCCCUGC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archive.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Te Te Te To
Star sequence

Cpi-Mir-142-P4-v3_5p*
mirBase accessionMIMAT0037766
Sequence 
0- CAUAAAGUAGAAAGCACUACUAA -23
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Mature sequence

Cpi-Mir-142-P4-v3_3p
mirBase accessionMIMAT0037767
Sequence 
37- UGUAGUGUUUCCUACUUUAUGGA -60
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Variant

Cpi-Mir-142-P4-v4
Seed CCAUAAA
Precursor
(pre-Mir +30nt flank)		 
GGACUGGCACCGAUACGGACAGUGCACUCCUCCAUAAAGUAGAAAGCACUACUAAACCGCCGCGUCCCGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGGACGAGAGACC
Get precursor sequence
Structure
        10          20        30        40        50        60 
GGACUGGCACCGAUACGG--|          C            A         UAAACCGC 
                    ACAGUGCACUC UCCAUAAAGUAG AAGCACUAC        C
                    UGUCAUGUGAG AGGUAUUUCAUC UUUGUGAUG        G
CCAGAGAGCAGGGCAACGAG^          U            C         UGCCCUGC 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archive.
3' NTU Unknown
MotifsNo
Tissue expression
- +
Te Te Te To
Mature sequence

Cpi-Mir-142-P4-v4_5p
mirBase accessionMIMAT0037766
Sequence 
0- UCCAUAAAGUAGAAAGCACUAC -22
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Star sequence

Cpi-Mir-142-P4-v4_3p*
mirBase accessionMIMAT0037767
Sequence 
42- AGUGUUUCCUACUUUAUGGAUG -64
Get sequence