| MirGeneDB ID | Cpo-Mir-6529 |
|---|
| Family name |
MIR-6529 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-6529
|
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| Paralogues |
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| Orthologues |
Bta-Mir-6529
Cfa-Mir-6529
Cja-Mir-6529
Dno-Mir-6529
Eca-Mir-6529
Ete-Mir-6529
Hsa-Mir-6529
Laf-Mir-6529
Mml-Mir-6529
Mmr-Mir-6529
Ocu-Mir-6529
Pab-Mir-6529
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(cavPor3) |
scaffold_35: 21457209-21457269 [-]
UCSC
|
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| Seed |
AGAGAUC |
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Precursor
(pre-Mir +30nt flank) |
CAGAUCUUAGAUAAGAAAACCUGUUCUCUUGAGAGAUCAGAGGCGCAGAGUACGUCACUGUCAAUAAAGCCUGUGCCUUUUACCUCUUUAAGAGCGCAUGGUUUCAUUCUGCUCCUACACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAGAUCUUAGAUAAGAA- - U -| AUC A ACGUCACU
AACC UGU CUCUU GAGAG AGAGGCGCAG GU \
UUGG ACG GAGAA UUCUC UUUCCGUGUC CG G
UCACAUCCUCGUCUUACU U C U^ CAU - AAAUAACU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Mature sequence |
Cpo-Mir-6529_5p |
| mirBase accession | MIMAT0047443 |
|---|
| Sequence |
0- GAGAGAUCAGAGGCGCAGAGU -21
Get sequence
|
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| Star sequence |
Cpo-Mir-6529_3p* |
| mirBase accession | MIMAT0047444 |
|---|
| Sequence |
39- CCUGUGCCUUUUACCUCUUUAA -61
Get sequence
|
|---|
