MirGeneDB 3.0
MirGeneDB ID

Dno-Mir-505

Family name MIR-505 (all species)
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-505
Paralogues Dno-Mir-505-v1 
Orthologues Cja-Mir-505 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(dasNov3)		 JH574203: 317619-317677 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-505-v2)		 Mir-505-v1 JH574203: 317619-317677 [+] UCSC Ensembl
Mir-505-v2 JH574203: 317619-317677 [+] UCSC Ensembl
Variant

Dno-Mir-505-v2
Seed UCAACAC
Precursor
(pre-Mir +30nt flank)		 
CUGCCGGUGGUAAAUUGAUGCACCCGGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGUUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGCAUCACCAAGUUCGUGGAUUUUC
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Structure
        10           20        30        40        50         
CUGCCGGUGGUAAAUUG---|   AC    U           G    A       UUCUGC 
                    AUGC  CCGG GGGGGAGCCAG AAGU UUGAUGU      \
                    UACG  GGUC CUCCUUUGGUC UUCA AACUGCG      C
CUUUUAGGUGCUUGAACCAC^   A-    U           G    C       AUUUGA 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Dno-Mir-505-v2_5p*
mirBase accessionMIMAT0047948
Sequence 
0- GGGAGCCAGGAAGUAUUGAUGU -22
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Mature sequence

Dno-Mir-505-v2_3p
mirBase accessionMIMAT0047949
Sequence 
37- GUCAACACUUGCUGGUUUCCUC -59
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Variant

Dno-Mir-505-v1
Seed GUCAACA
Precursor
(pre-Mir +30nt flank)		 
CUGCCGGUGGUAAAUUGAUGCACCCGGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGUUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGCAUCACCAAGUUCGUGGAUUUUC
Get precursor sequence
Structure
        10           20        30        40        50         
CUGCCGGUGGUAAAUUG---|   AC    U           G    A        UCUGC 
                    AUGC  CCGG GGGGGAGCCAG AAGU UUGAUGUU     \
                    UACG  GGUC CUCCUUUGGUC UUCA AACUGCGA     C
CUUUUAGGUGCUUGAACCAC^   A-    U           G    C        UUUGA 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Dno-Mir-505-v1_5p*
mirBase accessionMIMAT0047948
Sequence 
0- GGGAGCCAGGAAGUAUUGAUGUU -23
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Mature sequence

Dno-Mir-505-v1_3p
mirBase accessionMIMAT0047949
Sequence 
36- CGUCAACACUUGCUGGUUUCCUC -59
Get sequence