| MirGeneDB ID | Dre-Mir-30-P1o1 |
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| Family name |
MIR-30 (all species) |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-30a
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| Paralogues |
Dre-Mir-30-P1a
Dre-Mir-30-P1b
Dre-Mir-30-P1d
Dre-Mir-30-P2a
Dre-Mir-30-P2b
Dre-Mir-30-P2d
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| Orthologues |
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| Node of Origin (locus) |
D. rerio
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| Node of Origin (family) |
Vertebrata
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Genome context
(danRer11) |
chr19: 4737589-4737653 [+]
UCSC
Ensembl
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| Seed |
GUAAACA |
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Precursor
(pre-Mir +30nt flank) |
UGUGUGUGUGUUCCAAUGGCUCCUUGCAGUUGUAAACAUUCCCGACUGGAAGUUGUAAUGCAGAAAAUCUCAGCUUUCAGUCUGAUGUUUGCUGCUACUGGUGGCCUCCAGCAACUGUCUGUCUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UGUGUGUGUGUUCCAAU--| UC UGC U CCC GUAAUGCA
GGC CU AGU GUAAACAUU GACUGGAAGUU \
CCG GG UCG CGUUUGUAG CUGACUUUCGA G
GUCUGUCUGUCAACGACCU^ GU UCA U U-- CUCUAAAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Mature sequence |
Dre-Mir-30-P1o1_5p |
| mirBase accession | MIMAT0001803 |
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| Sequence |
0- UGUAAACAUUCCCGACUGGAAGUU -24
Get sequence
|
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| Proposed targets |
TargetScanFish: dre-miR-30a
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| Star sequence |
Dre-Mir-30-P1o1_3p* |
| mirBase accession | MIMAT0031951 |
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| Sequence |
43- CUUUCAGUCUGAUGUUUGCUGC -65
Get sequence
|
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