MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-30-P2a

Family name MIR-30 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-30b
Paralogues Dre-Mir-30-P1a  Dre-Mir-30-P1b  Dre-Mir-30-P1d  Dre-Mir-30-P1o1  Dre-Mir-30-P2b  Dre-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cja-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Eca-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Laf-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmr-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Neu-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pab-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr16: 25341739-25341799 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2a)		 Mir-30-P1a chr16: 25341450-25341514 [+] UCSC Ensembl
Mir-30-P2a chr16: 25341739-25341799 [+] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
UGGUAAACUUUCAUCUUCCAGUGUAGUCGCUGUAAACAUCCUACACUCAGCUGUGAGCUGCAGACGAGGCUGGGCGGAGGGUGUUUGCUGUGACUGUCUGGAGCUCCUCACUGAGGAAAAA
Get precursor sequence
Structure
        10           20        30        40        50          
UGGUAAACUUUCAUCUU---|   UGU      U           ACA       GUGAGCU 
                    CCAG   AGUCGC GUAAACAUCCU   CUCAGCU       \
                    GGUC   UCAGUG CGUUUGUGGGA   GGGUCGG       G
AAAAAGGAGUCACUCCUCGA^   UG-      U           GGC       AGCAGAC 
 .       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-30-P2a_5p
mirBase accessionMIMAT0001804
Sequence 
0- UGUAAACAUCCUACACUCAGCU -22
Get sequence
Proposed targets TargetScanFish: dre-miR-30b
Star sequence

Dre-Mir-30-P2a_3p*
mirBase accessionNone
Sequence 
39- CUGGGCGGAGGGUGUUUGCUGU -61
Get sequence