MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-30-P2a

Family name MIR-30 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-30-P1a  Cmi-Mir-30-P1b  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cmi-Mir-30-P2b  Cmi-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cja-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Eca-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Laf-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmr-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Neu-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pab-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636098.1: 102708-102768 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2a)		 Mir-30-P2a KI636098.1: 102708-102768 [-] UCSC Ensembl
Mir-30-P1a KI636098.1: 106183-106246 [-] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
GUGUAGCGUUUCCAACCGAGUUUCAGACACUGUAAACAUCCUACACUCAGCUUUAACAAGUAAAAGCGGCUGGGAGACGGGUGUUUACUCUAACUGGCUUGGCAAAUCACCGCCUCGGAAG
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Structure
        10            20        30        40        50          
GUGUAGCGUUUCCAACC----|   UU   ACACU          UACA       UUAACAA 
                     GAGU  CAG     GUAAACAUCC    CUCAGCU       \
                     UUCG  GUC     CAUUUGUGGG    GGGUCGG       G
GAAGGCUCCGCCACUAAACGG^   --   AAUCU          CAGA       CGAAAAU 
 .       110       100          90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-30-P2a_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCUACACUCAGCU -22
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Star sequence

Cmi-Mir-30-P2a_3p*
mirBase accessionNone
Sequence 
39- CUGGGAGACGGGUGUUUACUCU -61
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