MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-30-P1a

Family name MIR-30 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-30-P1b  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cmi-Mir-30-P2a  Cmi-Mir-30-P2b  Cmi-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cja-Mir-30-P1a  Cli-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Eca-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Laf-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmr-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Neu-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pab-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636098.1: 106183-106246 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1a)		 Mir-30-P2a KI636098.1: 102708-102768 [-] UCSC Ensembl
Mir-30-P1a KI636098.1: 106183-106246 [-] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
GGAGGCCUCCUCCCUUACGUAUUCUGUUGCUGUAAACAUCCCCGACUGGAAGCUGUAAAACAGCAGCUCCAGCUUUCAGUCCGAUGUUUGCGGCAGCCGGCUACAGCCAUAGCCAGAGUGUGGA
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Structure
        10          20        30        40        50        60  
GGAGGCCUCCUCCCUUAC--|  UU U               CCC           GUAAAAC 
                    GUA  C GUUGCUGUAAACAUC   GACUGGAAGCU       A
                    CAU  G CGACGGCGUUUGUAG   CUGACUUUCGA       G
AGGUGUGAGACCGAUACCGA^  CG C               C--           CCUCGAC 
  120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-30-P1a_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Star sequence

Cmi-Mir-30-P1a_3p*
mirBase accessionNone
Sequence 
42- CUUUCAGUCCGAUGUUUGCGGC -64
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