MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-30-P2a

Family name MIR-30 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-30b
Paralogues Eca-Mir-30-P1a  Eca-Mir-30-P1b  Eca-Mir-30-P1d  Eca-Mir-30-P2b  Eca-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cja-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Laf-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmr-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Neu-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pab-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009156.1: 77314898-77314957 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2a)		 Mir-30-P2a CM009156.1: 77314898-77314957 [-] UCSC Ensembl
Mir-30-P1a CM009156.1: 77319230-77319291 [-] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
AAGUCCUGCUUUAAACCAAGUUUCAGUUCAUGUAAACAUCCUACACUCAGCUGUACUACAUGGAUUGGCUGGGAGGUGGAUGUUUACUUCAGCUGACUUGGAAUAUCAGCCAUUAACCUA
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Structure
        10            20        30        40         50         
AAGUCCUGCUUUAAACC----|  UU      CAU          U  A-       GUACUA 
                     AAG  UCAGUU   GUAAACAUCC AC  CUCAGCU      C
                     UUC  AGUCGA   CAUUUGUAGG UG  GGGUCGG      A
AUCCAAUUACCGACUAUAAGG^  --      CUU          -  GA       UUAGGU 
.       110       100          90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-30-P2a_5p
mirBase accessionMIMAT0013005
Sequence 
0- UGUAAACAUCCUACACUCAGCU -22
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Star sequence

Eca-Mir-30-P2a_3p*
mirBase accessionNone
Sequence 
38- CUGGGAGGUGGAUGUUUACUUC -60
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