Mir-30-P1b

MirGeneDB ID

Eca-Mir-30-P1b

Family name

MIR-30 (all species)

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Eca-Mir-30-P1a Eca-Mir-30-P1d Eca-Mir-30-P2a Eca-Mir-30-P2b Eca-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cja-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Laf-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmr-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pab-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009167.1: 63894235-63894290 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1b)

Mir-30-P2b CM009167.1: 63868913-63868974 [-] UCSC Ensembl
Mir-30-P1b CM009167.1: 63894235-63894290 [-] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

AGAGGAGCCCGCGCCCCGGCAGCGGGCGCCUGUAAACACCCGACUGGAAGCCGUGGGCGGCGGGCUUUCAGUCGGGUGUCUGCAGCCGCCGCCUGCCCCGCCCCGCGCCGCGCUCG

Get precursor sequence

Structure

        10          20        30        40        50       
AGAGGAGCCCGCGCCCC--|    CG    C     A                 GUGG 
                   GGCAG  GGCG CUGUA ACACCCGACUGGAAGCC    G
                   CCGUC  CCGC GACGU UGUGGGCUGACUUUCGG    C
GCUCGCGCCGCGCCCCGCC^    CG    C     C                 GCGG 
    110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-30-P1b_5p

mirBase accession

None

Sequence

0- UGUAAACACCCGACUGGAAGCC -22

Get sequence

Star sequence

Eca-Mir-30-P1b_3p*

mirBase accession

None

Sequence

34- CUUUCAGUCGGGUGUCUGCAGC -56

Get sequence