Mir-30-P1b

MirGeneDB ID

Cli-Mir-30-P1b

Family name

MIR-30 (all species)

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-30a

Paralogues

Cli-Mir-30-P1a Cli-Mir-30-P1d Cli-Mir-30-P2b Cli-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cja-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Eca-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Laf-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmr-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pab-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(colLiv2)

scaffold102: 5103433-5103496 [+]

Clustered miRNAs
(< 50kb from Mir-30-P1b)

Mir-30-P1b scaffold102: 5103433-5103496 [+]
Mir-30-P2b scaffold102: 5128901-5128962 [+]

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

GAAUGUGUAUUGCUGUUGACAGUGAGCGACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGGGGCUUUCAGUCGGAUGUUUGCAGCUGCCAACUGCCACAGACGUCAAGAAAUGUU

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Structure

        10          20        30        40        50        60  
GAAUGUGUAUUGCUGUU--|A    GA   A            UC           GUGAAGC 
                   G CAGU  GCG CUGUAAACAUCC  GACUGGAAGCU       A
                   C GUCA  CGU GACGUUUGUAGG  CUGACUUUCGG       G
UUGUAAAGAACUGCAGACA^C    AC   C            --           GGUAGAC 
  120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Li	Mi	Ov	Pe	Te	To

Mature sequence

Cli-Mir-30-P1b_5p

mirBase accession

MIMAT0038451

Sequence

0- UGUAAACAUCCUCGACUGGAAGCU -24

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Star sequence

Cli-Mir-30-P1b_3p*

mirBase accession

MIMAT0038452

Sequence

42- CUUUCAGUCGGAUGUUUGCAGC -64

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