| MirGeneDB ID | Spt-Mir-30-P2a |
|---|---|
| Family name | MIR-30 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-30-P1a Spt-Mir-30-P1b Spt-Mir-30-P1d Spt-Mir-30-P2b Spt-Mir-30-P2d |
| Orthologues | Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cja-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Eca-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Laf-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmr-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Neu-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pab-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01012160.1: 1437841-1437900 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-30-P2a) |
Mir-30-P2a
QEPC01012160.1: 1437841-1437900 [-]
UCSC
Ensembl
Mir-30-P1a QEPC01012160.1: 1443054-1443115 [-] UCSC Ensembl |
| Seed | GUAAACA |
| Precursor (pre-Mir +30nt flank) |
CAGUAUUCACUAACACUGAUUUUUAGUUCAUGUAAACAUCCUACACUCAGCUCUAACACACGGAAUGGCUGGGAGGUGGAUGUUUACCUCAACUGAUUUGGAAAGGCAGCCUUCCUGAAUGet precursor sequence |
| Structure | 10 20 30 40 50 CAGUAUUCACUAACACUGAUUU--| CAU U A- CUAACA UUAGUU GUAAACAUCC AC CUCAGCU C AGUCAA CAUUUGUAGG UG GGGUCGG A UAAGUCCUUCCGACGGAAAGGUUU^ CUC - GA UAAGGC . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-30-P2a_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGUAAACAUCCUACACUCAGCU -22
Get sequence
|
| Star sequence | Spt-Mir-30-P2a_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- CUGGGAGGUGGAUGUUUACCUC -60
Get sequence
|
