Mir-30-P2a

MirGeneDB ID

Sto-Mir-30-P2a

Family name

MIR-30 (all species)

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-30-P1a Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Sto-Mir-30-P2b Sto-Mir-30-P2d

Orthologues

Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cja-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Eca-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Laf-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmr-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Neu-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pab-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01001400.1: 433282-433340 [+]

Clustered miRNAs
(< 50kb from Mir-30-P2a)

Mir-30-P1a BFAA01001400.1: 429280-429342 [+]
Mir-30-P2a BFAA01001400.1: 433282-433340 [+]

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

CUUGACCGUGUGCAACUGAGCUCCAGGCACUGUAAACAUCCUACACUCAGCUGUAACAUAAAAGAGGCUGAGAGAAGGUUGUUUACUUUAACUGGCUUGGAACAGCAACUUUUUAAAAU

Get precursor sequence

Structure

        10        20        30             40        50         
CUUGACCGUGUGCAACUGAGC       ACU-----|      U   ACA       GUAACA 
                     UCCAGGC        GUAAACA CCU   CUCAGCU      \
                     AGGUUCG        CAUUUGU GGA   GAGUCGG      U
UAAAAUUUUUCAACGACA---       GUCAAUUU^      U   AGA       AGAAAA 
       110          100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Sto-Mir-30-P2a_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCAGCU -22

Get sequence

Star sequence

Sto-Mir-30-P2a_3p*

mirBase accession

None

Sequence

37- CUGAGAGAAGGUUGUUUACUUU -59

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