MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-455-P2

Family name MIR-455 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-455-2
Paralogues Dre-Mir-455-P1-v1 
Orthologues Gja-Mir-455  Gmo-Mir-455-P2-v1  Lch-Mir-455  Mal-Mir-455-P2-v1  Mun-Mir-455  Pbv-Mir-455  Pma-Mir-455  Spt-Mir-455  Tni-Mir-455-P2-v1  Xtr-Mir-455 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr16: 51776559-51776616 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-455-P2-v1)		 Mir-455-P2-v2 chr16: 51776558-51776617 [+] UCSC Ensembl
Mir-455-P2-v3 chr16: 51776558-51776617 [+] UCSC Ensembl
Mir-455-P2-v1 chr16: 51776559-51776616 [+] UCSC Ensembl
Variant

Dre-Mir-455-P2-v1
Seed AUGUGCC
Precursor
(pre-Mir +30nt flank)		 
UGUUUCCAUCGUUGUUCCCUGAAGUGAGGGUAUGUGCCCUUGGACUACAUUGUGGAGGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUACUUCAUGGCCUACAUCAACACGAAGA
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Structure
        10          20        30        40        50        
UGUUUCCAUCGUUGUUC-  -|        G          U      A   U UGGAG 
                  CC UGAAGUGAG GUAUGUGCCC UGGACU CAU G     G
                  GG ACUUCAUUC CAUAUACGGG ACCUGA GUA C     C
AGAAGCACAACUACAUCC  U^        A          U      C   C ACGAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-455-P2-v1_5p
mirBase accessionMIMAT0011302
Sequence 
0- UAUGUGCCCUUGGACUACAUUG -22
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Proposed targets TargetScanFish: dre-miR-455b
Star sequence

Dre-Mir-455-P2-v1_3p*
mirBase accessionMIMAT0031993
Sequence 
36- AUGCAGUCCAUGGGCAUAUACA -58
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Variant

Dre-Mir-455-P2-v2
Seed CAGUCCA
Precursor
(pre-Mir +30nt flank)		 
AUGUUUCCAUCGUUGUUCCCUGAAGUGAGGGUAUGUGCCCUUGGACUACAUUGUGGAGGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUACUUCAUGGCCUACAUCAACACGAAGAC
Get precursor sequence
Structure
        10          20        30        40        50         
AUGUUUCCAUCGUUGUU--| C         G          U      A   UGUGGAG 
                   CC UGAAGUGAG GUAUGUGCCC UGGACU CAU       G
                   GG ACUUCAUUC CAUAUACGGG ACCUGA GUA       C
CAGAAGCACAACUACAUCC^ U         A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-455-P2-v2_5p*
mirBase accessionMIMAT0011302
Sequence 
0- GUAUGUGCCCUUGGACUACAU -21
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Proposed targets TargetScanFish: dre-miR-455b
Mature sequence

Dre-Mir-455-P2-v2_3p
mirBase accessionMIMAT0031993
Sequence 
39- GCAGUCCAUGGGCAUAUACAC -60
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Variant

Dre-Mir-455-P2-v3
Seed GCAGUCC
Precursor
(pre-Mir +30nt flank)		 
AUGUUUCCAUCGUUGUUCCCUGAAGUGAGGGUAUGUGCCCUUGGACUACAUUGUGGAGGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUACUUCAUGGCCUACAUCAACACGAAGAC
Get precursor sequence
Structure
        10          20        30        40        50         
AUGUUUCCAUCGUUGUU--| C         G          U      A   UGUGGAG 
                   CC UGAAGUGAG GUAUGUGCCC UGGACU CAU       G
                   GG ACUUCAUUC CAUAUACGGG ACCUGA GUA       C
CAGAAGCACAACUACAUCC^ U         A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-455-P2-v3_5p*
mirBase accessionMIMAT0011302
Sequence 
0- GUAUGUGCCCUUGGACUACAUU -22
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Proposed targets TargetScanFish: dre-miR-455b
Mature sequence

Dre-Mir-455-P2-v3_3p
mirBase accessionMIMAT0031993
Sequence 
38- UGCAGUCCAUGGGCAUAUACAC -60
Get sequence