Mir-455-v1

MirGeneDB ID

Eca-Mir-455

Family name

MIR-455 (all species)

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-455-v1 Ami-Mir-455-v1 Bta-Mir-455-v1 Cfa-Mir-455-v1 Cja-Mir-455-v1 Cli-Mir-455-v1 Cmi-Mir-455-v1 Cpi-Mir-455-v1 Cpo-Mir-455-v1 Dno-Mir-455-v1 Ebu-Mir-455-v1 Ete-Mir-455-v1 Gga-Mir-455-v1 Gja-Mir-455 Hsa-Mir-455-v1 Laf-Mir-455-v1 Lch-Mir-455 Loc-Mir-455-v1 Mdo-Mir-455-v1 Mml-Mir-455-v1 Mmr-Mir-455-v1 Mmu-Mir-455-v1 Mun-Mir-455 Oan-Mir-455-v1 Ocu-Mir-455-v1 Pab-Mir-455-v1 Pbv-Mir-455 Pma-Mir-455 Rno-Mir-455-v1 Sha-Mir-455-v1 Spt-Mir-455 Sto-Mir-455-v1 Tgu-Mir-455-v1 Xtr-Mir-455

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009172.1: 19416044-19416101 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-455-v1)

Mir-455-v2 CM009172.1: 19416043-19416102 [+] UCSC Ensembl
Mir-455-v3 CM009172.1: 19416043-19416102 [+] UCSC Ensembl
Mir-455-v1 CM009172.1: 19416044-19416101 [+] UCSC Ensembl

Variant

Eca-Mir-455-v1

Seed

AUGUGCC

Precursor
(pre-Mir +30nt flank)

GAGCGCCCGCGCCCUUCCCUGGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAUGUCAUCGAGGAGC

Get precursor sequence

Structure

        10          20        30        40        50        
GAGCGCCCGCGCCCUUC-  -|  C UG  G          U      A   C UGGAA 
                  CC UGG G  AG GUAUGUGCCU UGGACU CAU G     G
                  GG ACU C  UC CAUAUACGGG ACCUGA GUA C     C
CGAGGAGCUACUGUAUCC  A^  C GU  A          U      C   C ACGAC 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-455-v1_5p

mirBase accession

None

Sequence

0- UAUGUGCCUUUGGACUACAUCG -22

Get sequence

Star sequence

Eca-Mir-455-v1_3p*

mirBase accession

None

Sequence

36- AUGCAGUCCAUGGGCAUAUACA -58

Get sequence

Variant

Eca-Mir-455-v2

Seed

CAGUCCA

Precursor
(pre-Mir +30nt flank)

CGAGCGCCCGCGCCCUUCCCUGGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAUGUCAUCGAGGAGCU

Get precursor sequence

Structure

        10          20        30        40        50         
CGAGCGCCCGCGCCCUU--| C   C UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCU UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
UCGAGGAGCUACUGUAUCC^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-455-v2_5p*

mirBase accession

None

Sequence

0- GUAUGUGCCUUUGGACUACAU -21

Get sequence

Mature sequence

Eca-Mir-455-v2_3p

mirBase accession

None

Sequence

39- GCAGUCCAUGGGCAUAUACAC -60

Get sequence

Variant

Eca-Mir-455-v3

Seed

GCAGUCC

Precursor
(pre-Mir +30nt flank)

CGAGCGCCCGCGCCCUUCCCUGGCGUGAGGGUAUGUGCCUUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGCCUAUGUCAUCGAGGAGCU

Get precursor sequence

Structure

        10          20        30        40        50         
CGAGCGCCCGCGCCCUU--| C   C UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCU UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
UCGAGGAGCUACUGUAUCC^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

UGUG in loop

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-455-v3_5p*

mirBase accession

None

Sequence

0- GUAUGUGCCUUUGGACUACAUC -22

Get sequence

Mature sequence

Eca-Mir-455-v3_3p

mirBase accession

None

Sequence

38- UGCAGUCCAUGGGCAUAUACAC -60

Get sequence