MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-876

Family name MIR-876 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-876
Paralogues Eca-Mir-876-v1 
Orthologues Ete-Mir-876  Mmr-Mir-876 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009170.1: 46212005-46212067 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-876-v2)		 Mir-876-v2 CM009170.1: 46212005-46212067 [-] UCSC Ensembl
Mir-876-v1 CM009170.1: 46212007-46212065 [-] UCSC Ensembl
Mir-873-v1 CM009170.1: 46232418-46232476 [-] UCSC Ensembl
Mir-873-v2 CM009170.1: 46232419-46232475 [-] UCSC Ensembl
Variant

Eca-Mir-876-v2
Seed GGAUUUC
Precursor
(pre-Mir +30nt flank)		 
ACCAAGCUUUACCCAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUGAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAUCU
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Structure
        10          20        30        40        50        60 
ACCAAGCUUUACCCAAA--|       UG         U               UAUCUGAG 
                   CUGUGAAG  CUGUGGAUU CUUUGUGAAUCACCA        \
                   GACACUUC  GAUACUUAA GAAACAUUUGGUGGU        C
UCUAGUUGACGUCUUCGUG^       GU         U               GGUGUAAU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-876-v2_5p
mirBase accessionMIMAT0013121
Sequence 
0- UGGAUUUCUUUGUGAAUCACCA -22
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Star sequence

Eca-Mir-876-v2_3p* (predicted)
mirBase accessionMIMAT0013122
Sequence 
41- GUGGUUUACAAAGUAAUUCAUA -63
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Variant

Eca-Mir-876-v1
Seed GGUGGUU
Precursor
(pre-Mir +30nt flank)		 
CAAGCUUUACCCAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUGAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAU
Get precursor sequence
Structure
        10          20        30        40        50         
CAAGCUUUACCCAAACU--|     UG         U                AUCUGAG 
                   GUGAAG  CUGUGGAUU CUUUGUGAAUCACCAU       \
                   CACUUC  GAUACUUAA GAAACAUUUGGUGGUG       C
UAGUUGACGUCUUCGUGGA^     GU         U                GUGUAAU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-876-v1_5p* (predicted)
mirBase accessionMIMAT0013121
Sequence 
0- GAUUUCUUUGUGAAUCACCAUA -22
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Mature sequence

Eca-Mir-876-v1_3p
mirBase accessionMIMAT0013122
Sequence 
37- UGGUGGUUUACAAAGUAAUUCA -59
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