MirGeneDB 3.0
MirGeneDB ID

Eca-Novel-6

Family name ECA-NOVEL-6 (all species)
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. caballus
Node of Origin (family) E. caballus
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009169.1: 50627251-50627308 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Novel-6)		 Novel-6 CM009169.1: 50627251-50627308 [-] UCSC Ensembl
Mir-1388 CM009169.1: 50627508-50627568 [-] UCSC Ensembl
Mir-1388-as CM009169.1: 50627510-50627570 [+] UCSC Ensembl
Seed GGGCCAC
Precursor
(pre-Mir +30nt flank)		 
GGGGAGGACUCCACCGUGUGGUGCCUCAGGUGGGCCACCUGGAGUCAGGAAGCAUCCCCCAAAGCACCUGGAUUCCUGGGGCUCCGGCCUGAUGCAGCUCGAGUGCUCCAGGGUGAGU
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Structure
        10        20         30          40         50        
GGGGAGGACUCCACCGUGUGG-   C     -   -|  A  U      -   AAGCAUCC 
                      UGC UCAGG UGG GCC CC GGAGUC AGG        \
                      ACG AGUCC GCC CGG GG CCUUAG UCC        C
UGAGUGGGACCUCGUGAGCUCG   U     G   U^  -  U      G   ACGAAACC 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Novel-6_5p
mirBase accessionNone
Sequence 
0- UGGGCCACCUGGAGUCAGGAAG -22
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Co-mature sequence

Eca-Novel-6_3p
mirBase accessionNone
Sequence 
35- ACCUGGAUUCCUGGGGCUCCGGC -58
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