| MirGeneDB ID | Efe-Mir-1999-P2 |
|---|
| Family name |
MIR-1999 (all species) |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Efe-Mir-1999-P1
|
|---|
| Orthologues |
Cte-Mir-1999
Dgr-Mir-1999
Pdu-Mir-1999
|
|---|
| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Pleistoannelida
|
|---|
Genome context
(Efe_combined) |
Efet.01.369807: 44-115 [-]
|
|---|
| Seed |
GUAGCCA |
|---|
Precursor
(pre-Mir +30nt flank) |
CAGGAAGAGGUACAGUCGUAGGACGCGGAGAGACUCUAGCUCUGGUUACACAUGGCCUGGCCCUUCGUGUAAUAAUAUGUGUGUAGCCAGGGCUUGGGCCUGCUUCCUUCCUUAGUCACCAGCUGUCGCCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAGGAAGAGGUACAGUCGU-| CGC - A U UGGCCUGGCCCUU
AGGA GGAG AG CUC AGCUCUGGUUACACA \
UCCU CUUC UC GGG UCGGGACCGAUGUGU C
CACCGCUGUCGACCACUGAU^ UC- G C U GUAUAAUAAUGUG
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Efe-Mir-1999-P2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGACUCUAGCUCUGGUUACACA -22
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-1999-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
51- UGUAGCCAGGGCUUGGGCCUG -72
Get sequence
|
|---|
