| MirGeneDB ID | Efe-Mir-87-o14 |
|---|
| Family name |
MIR-87 (all species) |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-87-o12
Efe-Mir-87-o13
Efe-Mir-87-o15
Efe-Mir-87-o16
Efe-Mir-87-o17
Efe-Mir-87-o18
|
|---|
| Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Efe_combined) |
Efet.01.53011: 1093-1153 [-]
|
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| Seed |
UGAGCAA |
|---|
Precursor
(pre-Mir +30nt flank) |
CAGUGACGUCAUAAGAAGAGGUCGGUCAGUGCACUUGAAAUCUUGUCUCAGGCCUCGGAUUCGACUCAGGUGAGCAAAACUUCAGGUGCAUCGACCACUGUCACGUAUACGACAAUGGAAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAGUGACGUCAUAAGAA-- -| C A AUC U AG CGGAU
GA GGU GGUC GUGCACUUGAA UUG CUC GCCU U
CU UCA CCAG UACGUGGACUU AAC GAG UGGA C
GAAGGUAACAGCAUAUGCA G^ - C CAA - -- CUCAG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-87-o14_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GCACUUGAAAUCUUGUCUCAGGCCU -25
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-87-o14_3p |
| mirBase accession | None |
|---|
| Sequence |
39- GUGAGCAAAACUUCAGGUGCAU -61
Get sequence
|
|---|
