| MirGeneDB ID | Esc-Mir-12519 |
|---|---|
| Family name | MIR-12519 (all species) |
| Species | Hawaiian bobtail squid (Euprymna scolopes) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Obi-Mir-12519 Ovu-Mir-12519 |
| Node of Origin (locus) | Coleoidea |
| Node of Origin (family) | Coleoidea |
| Genome context (esc-GCA_024364805.1_ASM2436480v1) |
JANFOI010000773.1: 101501-101559 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-12519-v1) |
Mir-12519-v1
JANFOI010000773.1: 101501-101559 [+]
Ensembl
Mir-12519-v2 JANFOI010000773.1: 101502-101558 [+] Ensembl |
| Variant | Esc-Mir-12519-v1 |
| Seed | UUUCUGU |
| Precursor (pre-Mir +30nt flank) |
UGGAGGUAGAUACUUGGCGAUUGGGGUACGUUUUCUGUUGCGCCAAGGGCAUAUUCGUAUUCUCUAUGCUCUGUCGCACCAAGAAGACAUAUCUGUCGCCUCCGCUACAUCACUACCUCGet precursor sequence |
| Structure | 10 20 30 40 50 UGGAGGUAGAUACUUGG----| UG C GU- CCA UUCGU CGAU GGGUA GUUUUCU UGCG AGGGCAUA \ GCUG UCUAU CAGAAGA ACGC UCUCGUAU A CUCCAUCACUACAUCGCCUCC^ -- A ACC UG- CUCUU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Esc-Mir-12519-v1_5p |
| mirBase accession | None |
| Sequence |
0- UUUUCUGUUGCGCCAAGGGCAUA -23
Get sequence
|
| Star sequence | Esc-Mir-12519-v1_3p* |
| mirBase accession | None |
| Sequence |
36- UGCUCUGUCGCACCAAGAAGACA -59
Get sequence
|
| Variant | Esc-Mir-12519-v2 |
| Seed | UUCUGUU |
| Precursor (pre-Mir +30nt flank) |
GGAGGUAGAUACUUGGCGAUUGGGGUACGUUUUCUGUUGCGCCAAGGGCAUAUUCGUAUUCUCUAUGCUCUGUCGCACCAAGAAGACAUAUCUGUCGCCUCCGCUACAUCACUACCUGet precursor sequence |
| Structure | 10 20 30 40 50 GGAGGUAGAUACUUGGC----| UG C GU- CCA UUCGU GAU GGGUA GUUUUCU UGCG AGGGCAUA \ CUG UCUAU CAGAAGA ACGC UCUCGUAU A UCCAUCACUACAUCGCCUCCG^ -- A ACC UG- CUCUU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Esc-Mir-12519-v2_5p |
| mirBase accession | None |
| Sequence |
0- UUUCUGUUGCGCCAAGGGCAUAU -23
Get sequence
|
| Star sequence | Esc-Mir-12519-v2_3p* |
| mirBase accession | None |
| Sequence |
34- AUGCUCUGUCGCACCAAGAAGAC -57
Get sequence
|
