| MirGeneDB ID | Esc-Mir-12535 |
|---|---|
| Family name | MIR-12535 (all species) |
| Species | Hawaiian bobtail squid (Euprymna scolopes) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Obi-Mir-12535-v1 Ovu-Mir-12535-v1 |
| Node of Origin (locus) | Coleoidea |
| Node of Origin (family) | Coleoidea |
| Genome context (esc-GCA_024364805.1_ASM2436480v1) |
CM044494.1: 144397409-144397469 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-12535-v1) |
Mir-12535-v1
CM044494.1: 144397409-144397469 [+]
Ensembl
Mir-12535-v2 CM044494.1: 144397409-144397469 [+] Ensembl |
| Variant | Esc-Mir-12535-v1 |
| Seed | UCAUCAU |
| Precursor (pre-Mir +30nt flank) |
GUGGUCGUCAAUAGGAAAGACAGGGCCAGUACAGCCUUGCAGGUGGUCAAAUACGUGUGUGAAAGACGUUUCAUCAUUCACAAGGCUGCACUGUCCUUGUUUACAUCAUCGAUUUACUGAGGet precursor sequence |
| Structure | 10 20 30 40 50 GUGGUCGUCAAUAGGAA--| C A CA C ACGUGUG AGACAGGG CAGU CAGCCUUG GGUGGU AAAU \ UUUGUUCC GUCA GUCGGAAC UUACUA UUUG U GAGUCAUUUAGCUACUACA^ U C AC C CAGAAAG . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12535-v1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACAGCCUUGCAGGUGGUCAAAU -22
Get sequence
|
| Mature sequence | Esc-Mir-12535-v1_3p |
| mirBase accession | None |
| Sequence |
39- UUCAUCAUUCACAAGGCUGCAC -61
Get sequence
|
| Variant | Esc-Mir-12535-v2 |
| Seed | UUCAUCA |
| Precursor (pre-Mir +30nt flank) |
GUGGUCGUCAAUAGGAAAGACAGGGCCAGUACAGCCUUGCAGGUGGUCAAAUACGUGUGUGAAAGACGUUUCAUCAUUCACAAGGCUGCACUGUCCUUGUUUACAUCAUCGAUUUACUGAGGet precursor sequence |
| Structure | 10 20 30 40 50 GUGGUCGUCAAUAGGAA--| C A CA C ACGUGUG AGACAGGG CAGU CAGCCUUG GGUGGU AAAU \ UUUGUUCC GUCA GUCGGAAC UUACUA UUUG U GAGUCAUUUAGCUACUACA^ U C AC C CAGAAAG . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12535-v2_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACAGCCUUGCAGGUGGUCAAAUA -23
Get sequence
|
| Mature sequence | Esc-Mir-12535-v2_3p |
| mirBase accession | None |
| Sequence |
38- UUUCAUCAUUCACAAGGCUGCAC -61
Get sequence
|
