MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-101-P2

Family name MIR-101 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-101-1
Paralogues Gga-Mir-101-P1-v1  Gga-Mir-101-P2-v1 
Orthologues Aca-Mir-101-P2-v1  Ami-Mir-101-P2-v1  Bta-Mir-101-P2-v1  Cfa-Mir-101-P2-v1  Cja-Mir-101-P2-v1  Cli-Mir-101-P2-v1  Cmi-Mir-101-P2-v1  Cpi-Mir-101-P2-v1  Cpo-Mir-101-P2-v1  Dno-Mir-101-P2-v1  Dre-Mir-101-P2-v1  Eca-Mir-101-P2-v1  Ete-Mir-101-P2-v1  Gja-Mir-101-P2-v1  Gmo-Mir-101-P2-v1  Hsa-Mir-101-P2-v1  Laf-Mir-101-P2-v1  Lch-Mir-101-P2  Loc-Mir-101-P2-v1  Mal-Mir-101-P2-v1  Mdo-Mir-101-P2-v1  Mml-Mir-101-P2-v1  Mmr-Mir-101-P2-v1  Mmu-Mir-101-P2-v1  Mun-Mir-101-P2-v1  Neu-Mir-101-P2-v1  Oan-Mir-101-P2-v1  Ocu-Mir-101-P2-v1  Pab-Mir-101-P2-v1  Pbv-Mir-101-P2-v1  Rno-Mir-101-P2-v1  Sha-Mir-101-P2-v1  Spt-Mir-101-P2  Sto-Mir-101-P2-v1  Tgu-Mir-101-P2-v1  Tni-Mir-101-P2-v1  Xla-Mir-101-P2a-v1  Xla-Mir-101-P2b-v1  Xtr-Mir-101-P2-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 Z: 27510599-27510655 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-101-P2-v2)		 Mir-101-P2-v1 Z: 27510598-27510656 [+] UCSC Ensembl
Mir-101-P2-v2 Z: 27510599-27510655 [+] UCSC Ensembl
Variant

Gga-Mir-101-P2-v2
Seed UACAGUA
Precursor
(pre-Mir +30nt flank)		 
CAAACAAUAAGACUAUGAACUAUCCUUUUUCGGUUAUCAUGGUACCGGUGCUGUAUACGUGAAAGGUACAGUACUGUGAUAACUGAAGAAUGGUGGUGCCAUCACAUGAGAUCUAGG
Get precursor sequence
Structure
        10          20        30        40        50        
CAAACAAUAAGACUAUGA--|     C                    CG     GUAUA 
                    ACUAUC UUUUUCGGUUAUCAUGGUAC  GUGCU     C
                    UGGUGG AAGAAGUCAAUAGUGUCAUG  CAUGG     G
GGAUCUAGAGUACACUACCG^     U                    A-     AAAGU 
     110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-101-P2-v2_5p*
mirBase accessionMIMAT0026545
Sequence 
0- CGGUUAUCAUGGUACCGGUGCUG -23
Get sequence
Proposed targets TargetScanVert: gga-miR-101-1-5p
miRDB: MIMAT0026545
Mature sequence

Gga-Mir-101-P2-v2_3p
mirBase accessionMIMAT0001185
Sequence 
35- GUACAGUACUGUGAUAACUGAA -57
Get sequence
Proposed targets TargetScanVert: gga-miR-101-3p
miRDB: MIMAT0001185
Variant

Gga-Mir-101-P2-v1
Seed ACAGUAC
Precursor
(pre-Mir +30nt flank)		 
UCAAACAAUAAGACUAUGAACUAUCCUUUUUCGGUUAUCAUGGUACCGGUGCUGUAUACGUGAAAGGUACAGUACUGUGAUAACUGAAGAAUGGUGGUGCCAUCACAUGAGAUCUAGGA
Get precursor sequence
Structure
        10          20        30        40        50         
UCAAACAAUAAGACUAUGA--|     C                    CG     GUAUA 
                     ACUAUC UUUUUCGGUUAUCAUGGUAC  GUGCU     C
                     UGGUGG AAGAAGUCAAUAGUGUCAUG  CAUGG     G
AGGAUCUAGAGUACACUACCG^     U                    A-     AAAGU 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-101-P2-v1_5p*
mirBase accessionMIMAT0026545
Sequence 
0- UCGGUUAUCAUGGUACCGGUGCU -23
Get sequence
Proposed targets TargetScanVert: gga-miR-101-1-5p
miRDB: MIMAT0026545
Mature sequence

Gga-Mir-101-P2-v1_3p
mirBase accessionMIMAT0001185
Sequence 
37- UACAGUACUGUGAUAACUGAAG -59
Get sequence
Proposed targets TargetScanVert: gga-miR-101-3p
miRDB: MIMAT0001185