| MirGeneDB ID | Gja-Mir-1677-P7 |
|---|
| Family name |
MIR-1677 (all species) |
|---|
| Species |
Schlegels Japanese gecko (Gekko japonicus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aca-Mir-1677-P7
Cpi-Mir-1677-o7
Pbv-Mir-1677-P7
Spt-Mir-1677-P7
|
|---|
| Node of Origin (locus) |
Lepidosauria
|
|---|
| Node of Origin (family) |
Diapsida
|
|---|
Genome context
(GCF_001447785.1_Gekko_japonicus) |
NW_015182825.1: 1335-1392 [-]
|
|---|
| Seed |
CCAAAGC |
|---|
Precursor
(pre-Mir +30nt flank) |
CUUUGGUUCACUUCCUUGCUUAGGUCCUGAACCAAAGCCCCUCGAGGACAAUGUGAGUCUUUCUAUUGACUUCAGUGGGCUUAGGAUCAGGCCCUUAAUGCACAGCUACUCACACGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUUGGUUCACUUCCUUGCUU-- U A A -| C A GUGAG
AGG CCUGA CC AAGCCC CU GAGG CAAU U
UCC GGACU GG UUCGGG GA CUUC GUUA C
ACGCACACUCAUCGACACGUAAU C A A U^ - A UCUUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Gja-Mir-1677-P7_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACCAAAGCCCCUCGAGGACAAU -22
Get sequence
|
|---|
| Co-mature sequence |
Gja-Mir-1677-P7_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UGACUUCAGUGGGCUUAGGAUC -58
Get sequence
|
|---|
