| MirGeneDB ID | Spt-Mir-1677-P7 |
|---|---|
| Family name | MIR-1677 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-1677-P7 Cpi-Mir-1677-o7 Gja-Mir-1677-P7 Pbv-Mir-1677-P7 |
| Node of Origin (locus) | Lepidosauria |
| Node of Origin (family) | Diapsida |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01009472.1: 17400820-17400877 [-] UCSC Ensembl |
| Seed | CCAAAGC |
| Precursor (pre-Mir +30nt flank) |
UCUGGGUUAAUUCCUUUGCUUUGGUCCUGAACCAAAGCCCAUUGAGGUCAAUGUGAGUCUUUCUGUUGACUUCAGUGGGCUCAGGAUCAGGCCCCGAGUCCAUGUCCGCUCUCUCUUUGet precursor sequence |
| Structure | 10 20 30 40 50 UCUGGGUUAAUUCCUUU--| U U A AA GUGAG GCUU GG CCUGA CC AGCCCAUUGAGGUCAAU U UGAG CC GGACU GG UCGGGUGACUUCAGUUG C UUUCUCUCUCGCCUGUACC^ C C A AC UCUUU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Spt-Mir-1677-P7_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- ACCAAAGCCCAUUGAGGUCAAU -22
Get sequence
|
| Co-mature sequence | Spt-Mir-1677-P7_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- GACUUCAGUGGGCUCAGGAUC -58
Get sequence
|
