| MirGeneDB ID | Gmo-Mir-11230 |
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| Family name |
MIR-11230 (all species) |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-11230
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
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| Node of Origin (family) |
G. morhua
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1770: 375102-375158 [+]
UCSC
Ensembl
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| Seed |
AAACCGC |
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Precursor
(pre-Mir +30nt flank) |
CUUGUACAUCGCCAUUUGCCUAUCACAUUUCAAACCGCCAAGCAGGCGAACUUUGUUGAUGCAAGUUCGCCUGUUCGGCGGUUGAAAAUGUGAACGGUUAACGGCGUUAACCGUUUU
Get precursor sequence
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| Structure | 10 20 30 40 50
CUUGUACAUCGCCAUUU--| UA CA A UUGUU
GCC UCACAUUU AACCGCC AGCAGGCGAACU \
UGG AGUGUAAA UUGGCGG UUGUCCGCUUGA G
UUUUGCCAAUUGCGGCAAU^ CA AG C ACGUA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | Mirbase gives the reverse complement of this gene. |
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Mature sequence |
Gmo-Mir-11230_5p |
| mirBase accession | MIMAT0044400 |
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| Sequence |
0- CAAACCGCCAAGCAGGCGAACU -22
Get sequence
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| Star sequence |
Gmo-Mir-11230_3p* |
| mirBase accession | None |
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| Sequence |
35- UUCGCCUGUUCGGCGGUUGAAA -57
Get sequence
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