MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-218-P3

Family name MIR-218 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-218b
Paralogues Gmo-Mir-218-P2  Gmo-Mir-218-P4 
Orthologues Dre-Mir-218-P3  Lch-Mir-218-P3  Loc-Mir-218-P3  Mal-Mir-218-P3  Pma-Mir-218-o3  Tni-Mir-218-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_3571: 41286-41343 [-] UCSC Ensembl
Seed UGUGCUU
Precursor
(pre-Mir +30nt flank)		 
AACGGGUGGAUGUCUUUGCCCAGGACCCCAUUGUGCUUGAUCUAACCAUGCAGUGCGUCUUCUGUCCAUGGUUGUACCAAGCACCUUGGAGGCUUGCGAGCACUUGUCUUCUCUUUCG
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Structure
        10        20           30        40        50        
AACGGGUGGAUGUCUUUGCC--|   A  -   UU       AUC        CAGUGCG 
                      CAGG CC CCA  GUGCUUG   UAACCAUG       U
                      GUUC GG GGU  CACGAAC   GUUGGUAC       C
GCUUUCUCUUCUGUUCACGAGC^   -  A   UC       CAU        CUGUCUU 
      110       100         90        80        70        60
Deep sequencing
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CommentMirbase gives the reverse complement of this gene.
3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-218-P3_5p
mirBase accessionMIMAT0044228
Sequence 
0- UUGUGCUUGAUCUAACCAUGCA -22
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Star sequence

Gmo-Mir-218-P3_3p* (predicted)
mirBase accessionNone
Sequence 
36- CAUGGUUGUACCAAGCACCUUG -58
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