| MirGeneDB ID | Loc-Mir-218-P3 |
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| Family name |
MIR-218 (all species) |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
Loc-Mir-218-P2
Loc-Mir-218-P4
|
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| Orthologues |
Dre-Mir-218-P3
Gmo-Mir-218-P3
Lch-Mir-218-P3
Mal-Mir-218-P3
Pma-Mir-218-o3
Tni-Mir-218-P3
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(LepOcu1) |
LG1: 7975230-7975287 [+]
Ensembl
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| Seed |
UGUGCUU |
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Precursor
(pre-Mir +30nt flank) |
GUUCAUACCCAACUCUUGCCCAGGACUCCAUUGUGCUUGAUCUAACCAUGUGAAUCUGCUGCUGCCCAUGGUGGAGCCAAGCACCCUGGAGAGCUGUGAGCAAUUUCCUCCUCUCCUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUUCAUACCCAACUCUUGCC-- GA UU A-| A UGAAUCU
CAG CUCCA GUGCUUG UCUA CCAUG G
GUC GAGGU CACGAAC AGGU GGUAC C
CUCCUCUCCUCCUUUAACGAGU GA CC CG^ - CCGUCGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Mature sequence |
Loc-Mir-218-P3_5p |
| mirBase accession | None |
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| Sequence |
0- UUGUGCUUGAUCUAACCAUGUGA -23
Get sequence
|
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| Star sequence |
Loc-Mir-218-P3_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- CAUGGUGGAGCCAAGCACCCUG -58
Get sequence
|
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