Mir-34-P3d

MirGeneDB ID

Gmo-Mir-34-P3d

Family name

MIR-34 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-449a

Paralogues

Gmo-Mir-34-P1 Gmo-Mir-34-P3c

Orthologues

Aae-Mir-34 Aca-Mir-34-P3d Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3d Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cli-Mir-34-P3d Cmi-Mir-34-P3d Cpi-Mir-34-P3d Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3d Gja-Mir-34-P3d Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Isc-Mir-34 Lch-Mir-34-P3d Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3d Mal-Mir-34-P3d Mdo-Mir-34-P3d Mgi-Mir-34 Mom-Mir-34 Mun-Mir-34-P3d Neu-Mir-34-P3d Npo-Mir-34 Obi-Mir-34 Ofu-Mir-34 Ovu-Mir-34 Pau-Mir-34 Pbv-Mir-34-P3d Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sha-Mir-34-P3d Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3d Spu-Mir-34 Sto-Mir-34-P3d Tca-Mir-34 Tgu-Mir-34-P3d Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2 Xtr-Mir-34-P3d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_4451: 23653-23711 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3d)

Mir-34-P3d GeneScaffold_4451: 23653-23711 [-] UCSC Ensembl
Mir-34-P3c GeneScaffold_4451: 23964-24018 [-] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

GGAAGCAGUGCUGAGAUUGGGUCGGCUGGAAGGCAGUGUCUUGUUAGCUGGUUUGUUGUGUGUUUGCCAGCUUACCUGCUACUGCCCUCCUACUAUCCAUGGAAACCAGUAAGGUGCUG

Get precursor sequence

Structure

        10           20        30        40        50         
GGAAGCAGUGCUGAGAU---|    C  CU   A       UCUU  U       UUGUUG 
                    UGGGU GG  GGA GGCAGUG    GU AGCUGGU      \
                    ACCUA UC  CCU CCGUCAU    CA UCGACCG      U
GUCGUGGAAUGACCAAAGGU^    -  AU   C       CGUC  U       UUUGUG 
       110       100         90        80        70        60