MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-279-P2

Family name MIR-279 (all species)
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-279-P1  Gpa-Mir-279-P3 
Orthologues Aae-Mir-279-P2  Aga-Mir-279-P2  Agr-Mir-279  Bge-Mir-279-P2  Bko-Mir-279-o2  Bpl-Mir-279  Dan-Mir-279-P2  Dlo-Mir-279-P2  Dma-Mir-279-P2  Dme-Mir-279-P2  Dmo-Mir-279-P2  Dpu-Mir-279-P2  Dsi-Mir-279-P2  Dya-Mir-279-P2  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o2  Hme-Mir-279-P2  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P2 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(GpalI1)		 Scaffold54: 1350149-1350215 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P2)		 Mir-279-P2 Scaffold54: 1350149-1350215 [+] Ensembl
Mir-279-P3 Scaffold54: 1375135-1375199 [+] Ensembl
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
UAUUACCUCGCACAAAAUACUGCUGUUUUUAGUGAGUGAGGGUCCAGUGUUUCACAUGGUUUUUUUCAGAUAUUGUGACUAGAUCCACACUCAUUAAAAACGGUUGUUUAUAUCUGAUGAAUUCUGU
Get precursor sequence
Structure
        10          20        30        40        50        60     
UAUUACCUCGCACAAAAU--| U                 A     C  UGUU     UGGUUUUU 
                    AC GCUGUUUUUAGUGAGUG GGGUC AG    UCACA        \
                    UG UGGCAAAAAUUACUCAC CCUAG UC    AGUGU        U
UGUCUUAAGUAGUCUAUAUU^ U                 A     A  ----     UAUAGACU 
     120       110       100        90        80            70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To To To To To To To To To To To To To To To To To To To To To
Star sequence

Gpa-Mir-279-P2_5p*
mirBase accessionNone
Sequence 
0- AGUGAGUGAGGGUCCAGUGUUUCACA -26
Get sequence
Mature sequence

Gpa-Mir-279-P2_3p
mirBase accessionNone
Sequence 
45- UGACUAGAUCCACACUCAUUAA -67
Get sequence