| MirGeneDB ID | Gpa-Mir-92-o62 |
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| Family name |
MIR-92 (all species) |
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| Species |
Tsetse fly (Glossina pallidipes) |
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| MiRBase ID |
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| Paralogues |
Gpa-Mir-92-P3
Gpa-Mir-92-P4
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
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| Node of Origin (locus) |
G. pallidipes
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| Node of Origin (family) |
Bilateria
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Genome context
(GpalI1) |
Scaffold35: 40492-40554 [+]
Ensembl
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| Seed |
AUUGCAC |
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Precursor
(pre-Mir +30nt flank) |
GACACAGUAAAGAGAAGCAUGUUUAUUUGAAGGCCGUGGCUUGUUGCAAUUAUGUGUUAAUGGAAAAAACAUAUUGCACAAUCCCCGGCCUGUAAAUGAAAUUGCGAACAACGUAAAGAAAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GACACAGUAAAGAGAAG--| UG A U C U U UGUUAAU
CA UUUAUUUG AGGCCG GG UUGU GCAAU AUG \
GU AAGUAAAU UCCGGC CC AACA CGUUA UAC G
AAAAAGAAAUGCAACAAGC^ UA G C U - - AAAAAAG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Gpa-Mir-92-o62_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGCCGUGGCUUGUUGCAAUUAUG -24
Get sequence
|
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| Mature sequence |
Gpa-Mir-92-o62_3p |
| mirBase accession | None |
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| Sequence |
41- UAUUGCACAAUCCCCGGCCUGU -63
Get sequence
|
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