| MirGeneDB ID | Gpa-Mir-988 |
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| Family name |
MIR-988 (all species) |
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| Species |
Tsetse fly (Glossina pallidipes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Aae-Mir-988
Aga-Mir-988
Dan-Mir-988
Dme-Mir-988
Dmo-Mir-988
Dsi-Mir-988
Dya-Mir-988
Hme-Mir-988
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| Node of Origin (locus) |
Panorpida
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| Node of Origin (family) |
Panorpida
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Genome context
(GpalI1) |
Scaffold61: 660052-660108 [-]
Ensembl
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| Seed |
CCCUUGU |
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Precursor
(pre-Mir +30nt flank) |
UUUACGAUUUAUAAAAUCUGUCCGUCCGUCGUGUGAUUUGAAGCAAGGUGAUUUGUAUGUGAAAUCCCCUUGUUGCAAACCUCACGCUGGUUGGAUGGAUAAGCGCCGUAGUGAGAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUUACGAUUUAUAAAAUCUG UC-- --| A U UUGUA
UCCGUCCG GUGUGA UUUG AGCAAGG GAU \
AGGUAGGU CGCACU AAAC UUGUUCC CUA U
AAGAGUGAUGCCGCGAAU-- UGGU CC^ G C AAGUG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Gpa-Mir-988_5p* |
| mirBase accession | None |
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| Sequence |
0- GUGUGAUUUGAAGCAAGGUGAU -22
Get sequence
|
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| Mature sequence |
Gpa-Mir-988_3p |
| mirBase accession | None |
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| Sequence |
35- CCCCUUGUUGCAAACCUCACGC -57
Get sequence
|
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